These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence [TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA-CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA] [+] EMBL BI305358 [TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATG ] [+] EMBL BI305205 [ GCGGCCGCGGTGTTGACGCTGGAGGAGCT AGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGC ] [+] EMBL BI305201 [ GGCCGCGGTGTTGACGCTGGA GAGCTCA GCTAGGGGAGACGTCCGA GAATT ACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCATTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACGAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA] [+] EMBL BI305269 [ GCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCACCCTGA GTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGG ] [+] EMBL BI305186 [ TCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCGTGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTGTGCTTTGCTGGCAAAGAGGGCTGCTTGTGTGATCAAGGGAG ] consensusID : consensus_9882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 246 fasta sequence [TAAATTACCTCACTAAGGGAATAGCTGGGCGCCGCGGTCGTGCTCAAGCCG-CGCC-NCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA] [+] EMBL CB967218 [TAAATTACCTCACTAAGGGAATAGCTGGGCGCCGCGGTCGTGCTCAAGCCG CGCC NCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA] [+] EMBL BI306322 [ TGCTCAAGCCGCCGCCGTCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9882#0 TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAG 60 consensus_9882#1 -------------------------------------TAAATTACCTCA--CTAAGGGAA 21 * * * **** *** **** consensus_9882#0 ACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCG 120 consensus_9882#1 TAGCTGGGCG---CCGCGGTCGTGCTCAAGCCGC--GCCNCGA-TGGT-ACGGC-CGGCG 73 * * * * *** * * ** * * *** * * *** ** ** consensus_9882#0 AGCACAACCACCGAGTCCATGTTCTACATCTCGCCGA-ATGGGAGGTTTAGGAGGAAGAT 179 consensus_9882#1 GTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGC 133 * ******* ** * **** ** * * * * ******* consensus_9882#0 CCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTG--GGACAGTCTTCGAG 237 consensus_9882#1 CATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAG 193 * * * **** * **** ** ** * * *** consensus_9882#0 GGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGG 297 consensus_9882#1 GAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA------- 246 * * ** * ** * * ** * * * *** ** * * * ** consensus_9882#0 AGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTT 357 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 GAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATC 417 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 TTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGA 477 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 GATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAA 537 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 CGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCC 597 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 GTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCG 657 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 TGCAAAGGAACTGTTTATTGGATGGCACCTGAGGTTGTCAATCCCAAGACAACATATGGA 717 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 CCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTT 777 consensus_9882#1 ------------------------------------------------------------ consensus_9882#0 CCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA 831 consensus_9882#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||