These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 501 fasta sequence [GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG-AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT-GTTTGTT-C-----TAAAAAAAAAA] [+] EMBL AU069675 [GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCA CTCGCGCGATCAATCGTCGGCGGCA CGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAAGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCNGGCGGTGGCCGATGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGANAAGTGATCCCGGCCTGTGTAGAGACGG ] [+] EMBL AU165278 [ GCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGNGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCTTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTG TTCTTGGTTCATGAAATTTTC CAATAATAATGTACTAa ] [+] EMBL AU165279 [ CTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTTGTT C TAAAAAAA ] [-] EMBL AU225898 [ ccgcttGCAGCGCGTCCTTTGGCTTTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTAGTTCC TAAAAAgcggc] [+] EMBL BQ908450 [ TCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGGTTTGTT CTCTTTTAAAAAAAAAA] [+] EMBL AU057881 [ GGCTCAAGGCCCTCGACGGNGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCNATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTTGTT C TAAAAAAAAAA] consensusID : consensus_9895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [AGAGGACGAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA] [-] EMBL CA761612 [AGAGGACGAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9895#0 GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGG 60 consensus_9895#1 ------------------------------------------------------------ consensus_9895#0 CAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTG 120 consensus_9895#1 ------------------------------------------------------------ consensus_9895#0 GTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAGCCTGTACTACGTGGC 180 consensus_9895#1 ------------------------------------------------------------ consensus_9895#0 GGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGA 240 consensus_9895#1 ------------------------------------------------------------ consensus_9895#0 CGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCC 300 consensus_9895#1 ------------------------------------------------------------ consensus_9895#0 TGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTT 360 consensus_9895#1 -------AGAGGAC-----GAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTT 48 *** * * * ** *** ************************** consensus_9895#0 TCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGC 420 consensus_9895#1 TCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGC 108 ************************************************************ consensus_9895#0 GATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCAT 480 consensus_9895#1 GATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCAT 168 ************************************************************ consensus_9895#0 CTGTTTGTTCTAAAAA-----AAAAA----------------------- 501 consensus_9895#1 CTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA 217 *********** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||