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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1623 fasta sequence
[AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA-GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT-GTGGTACTTCTG-CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA-GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG--TCT-GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA-TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTG-TTAGTGCATAAAAGGTATTAAAATTGCGTACCCGAAA]
[+] EMBL AK105342 [AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT GTGGTACTTCTG CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCACATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTC TTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG TCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTG TTAGTGCATAAAAGGTATTAAAATTGCGTACCCG ]
[+] EMBL AU173801 [ GAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAATATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGATAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCAGAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGACGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATTTGACTCAAATGGTGTTGTTGCTGCATATTTGG ]
[+] EMBL CA766837 [ ATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTTTCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGACCGTA GGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACAT GTGGTACTTCTG CGGTTGGCTGTATGCCTCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTGTCTCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGNTTGATGTCCTCACGCGCATCCTATGNTCATAAATTGTAAGCCATTTTGCGGTCTGC ]
[+] EMBL BI806723 [ TGACCCTAGGGAGAGTAAAATATG TAACTGGAAT GTCGTGACTTGTGAGAGGACATGGTGGTACTTCTGCCGGTTGCCTGTAT CCCCTGGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTG CCTTCTGAGTTGTGAATGGGAATATATGTAAC CTGTTGCTAC TTTACAGTCTTTTTTTTGGCGTGATGGA GTTGTCTCATTTTGGTTGCTAGATAAAAA GGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGA CAAGCTGAATAGTGTTAATAATGTTGTACTG TCTCTGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAA CCA TTT CGGTCTGCTGAAC AGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTTGTTTAGTGCATAAAAGGTACTAAAATTGCGTAaaaaaaa]
[+] EMBL CA756560 [ T GTGGTACTTCTG CGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTACGAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTGTCTCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTAC ]
[+] EMBL AU173802 [ AGTGACCAGGTTCTTGCCCTTNTGAGTTGTGAATGGGAATATA GGAACGCTGTTGCTACTTTTACAGTC TTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATAGTGTTAATAATGTTGTACTG TCT GGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCA TTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTaaaaaaaa ]
consensusID : consensus_9951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[GCCACGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGATATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATTTTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC]
[+] EMBL CB683034 [GCCACGGGTTCGGCCGCCTCCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACGGGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGAAGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCCAGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGATATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATTTTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCTTGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGATGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAATGTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9951#0 AAGCCCATCCAGAACCTCCCCCGACATCTAGGGTTTTCGCCGCCATGGGTTCGGCCGCCT 60
consensus_9951#1 -----------------------------------------GCCACGGGTTCGGCCGCCT 19
**** **************
consensus_9951#0 CCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACG 120
consensus_9951#1 CCGCCGCCGCGCCTCCCCCGCCGCCCACAGCGCAGCCCCACATGGCCGCGCCGCCGTACG 79
************************************************************
consensus_9951#0 GGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGA 180
consensus_9951#1 GGGCCGGCCTCGCGGGGATCCTCCCGCCGAAGCCGGACGGCGAGGAGGAGGGGAAGAAGA 139
************************************************************
consensus_9951#0 AGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCC 240
consensus_9951#1 AGGAGGTGGAGAAGGTGGACTACCTCAACCTCCCCTGCCCCGTGCCCTTCGAGGAGATCC 199
************************************************************
consensus_9951#0 AGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCA 300
consensus_9951#1 AGCGCGAGGCCCTCATGTCGTTGAAACCTGAACTTTTTGAAGGATTGAGGTTTGACTTCA 259
************************************************************
consensus_9951#0 CTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAG----------------------- 337
consensus_9951#1 CTAAAGGATTAAATCAGAAGTTCTCACTCAGCCACAGGTAAGGGAAACAGATAATGTTGA 319
*************************************
consensus_9951#0 ------------------------------------------------TGTTTTTATGGG 349
consensus_9951#1 TATGTGTTTCACTTTCTTTTGGGCAATTTATTCTGACAACATCAACAGTGTTTTTATGGG 379
************
consensus_9951#0 TTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGA 409
consensus_9951#1 TTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGA 439
************************************************************
consensus_9951#0 ATTCGGTGCCAATTTTATAGATCCAAAG-------------------------------- 437
consensus_9951#1 ATTCGGTGCCAATTTTATAGATCCAAAGGTTTGTCTGTATGGAATTGAATATTATGAATT 499
****************************
consensus_9951#0 ----------------------------------------------------TTAATTCT 445
consensus_9951#1 TTTTGCATAGTGTATTTTGTAACTTGTGATTTTGAAATGGAATTGTCTACAGTTAATTCT 559
********
consensus_9951#0 TGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGA 505
consensus_9951#1 TGTAGGAAGGGTGATGACAGATGGAAGACTGAATGCTCGTGTGAAATGTGATCTGACAGA 619
************************************************************
consensus_9951#0 TGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAAT 565
consensus_9951#1 TGATCTTACTCTGAAAATAAATGCACAGCTTACTCATGAGCCGCATTACTCCCAAGGAAT 679
************************************************************
consensus_9951#0 GTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGC 625
consensus_9951#1 GTTTAACTTTGACTACAAGGGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGC 739
************************************************************
consensus_9951#0 GTTCTATGGGGCAAATTATATTCAGAGTGTTACGCCGAACTTGTCAATGGGAACTGAAAT 685
consensus_9951#1 GTTCTATGGGGCAAAATATATTCAGAGTGTTACGCCGAACTTGTC--------------- 784
*************** *****************************
consensus_9951#0 ATTCTGGCTTGGCCACCAAAGGAAGTCAGGAATTGGTTTTGCTTCTCGATATAATTCAGA 745
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TAAAATGGTGGGTACTCTACAGGTTGCCAGTACTGGTATAGTTGCCTTGAGCTATGTCCA 805
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GAAAGTTTCCGAGAAGGTTTCCCTTGCGTCTGACTTCATGTATAATCACATGTCAAGGGA 865
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CGTTACTTCCAGCTTTGGTTATGACTATATGCTTAGGCAGTGCCGACTAAGGGGAAAATT 925
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TGACTCAAATGGTGTTGTTGCTGCATATTTGGAAGAGAGATTGAACATGGGAGTTAATTT 985
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TCTTCTTTCTGCAGAGATTGACCATTCAAAGAAGAACTACAAGTTTGGTTTTGGAATGAC 1045
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CGTAGGAGAGTAAAATATGTTAACTGGAATGGTCGTGACTTGTGAGAGGACATGTGGTAC 1105
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TTCTGCGGTTGGCTGTATGCCCCTTGGAAGGATGTTCGCATACTTCAAGCTTCGTGTTAC 1165
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GAGTGACCAGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATAGGAACGCTGTTGCTAC 1225
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TTTTACAGTCTTTTTTTTGGCGTGATGGAGGTTGTCTCATTTTGGTTGCTAGATAAAAAG 1285
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAGCAAGCTGAATA 1345
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GTGTTAATAATGTTGTACTGTCTGGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTT 1405
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TTTGTGTAATAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATG 1465
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TTTGATGTCCTCACGCGCATCCTATGTTCATAAATTGTAAGCCATTTGCGGTCTGCTGAA 1525
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATACATTTTTTGTTT 1585
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GTTAGTGCATAAAAGGTATTAAAATTGCGTACCCGAAA 1623
consensus_9951#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||