These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1028 fasta sequence [AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACGGTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTAGAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTTGTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAAGTTATGATTCCCTGCAGACTCCTTATTTTA-CAAATGCAGATGATGCTTGTCTGTCTGTATT-TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT-AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTGCT] [+] EMBL BI801772 [AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACGGTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTAGAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTTGTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAAGTTATGATTCCCTGCAGACACCACATATTACCAAATGCAGATGATGCTTGTCTGTCTGTATT TTCATTGCCC AACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACACAACTACACTTCTTACATGACACATCAAAACCAAAAA ] [+] EMBL CB653456 [ TCCTTTTTTTA C AATGCAGATGATGCTTGTCTGTCTGTATTCCTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTG ] [+] EMBL CB655127 [ tctttTTATTTTA CAAATGCAGATGATGCTTGTCTGTCTGCATT TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTG ] [+] EMBL AA753454 [ tttTTTTTTTA CAAATGCAGATGATGCTTGTCTGTCTGTATT TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGGCATCGATGGTGGCGAAGAAGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCC GTGCTCCGCGGTGCGGA NCCGAAGTACCGCCGGTGCTCGCCG CCTCCA CAGGTG CT CCCGG CAC CCGCCAC T CCTGCAatt ] [+] EMBL CB632929 [ AACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGGGCTCCGCGGGGCGGAGCCCGAAGTACCGCCGGGGCTCGCCGCCCTCCAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTGCT] consensusID : consensus_9983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGGGCGGCGTTCGGTCAGGCGAANGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGACCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT] [-] EMBL AU162216 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGGGCGGCGTTCGGTCAGGCGAANGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGACCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT] consensusID : consensus_9983#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGNGNCGACGGCGNCGTNGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGGCGACGCCCTTGGTCCACATGTNATGCTCTCTCTGNTGCCGNACTCGAACTCGATCACNCCGGTNCCGGTGCGGAGCCCGAAGTACCGCCGGTNTCGCNGCCCTCTAGCAGGTCCTCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN] [-] EMBL OSC575 [CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGNGNCGACGGCGNCGTNGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGGCGACGCCCTTGGTCCACATGTNATGCTCTCTCTGNTGCCGNACTCGAACTCGATCACNCCGGTNCCGGTGCGGAGCCCGAAGTACCGCCGGTNTCGCNGCCCTCTAGCAGGTCCTCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9983#0 AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACG 60 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTA 120 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTT 180 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAA 240 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GTTATGATTCCCTGCAGACTCCTTATTTTACAAATGCAGATGATGCTTGTCTGTCTGTAT 300 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 TTTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAA 360 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAA 45 consensus_9983#0 CAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACA 420 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 CAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACA 105 consensus_9983#0 TCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 480 consensus_9983#2 --------------------CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 40 consensus_9983#1 TCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 165 ****** ********************************* consensus_9983#0 AGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCA 540 consensus_9983#2 AGTGACATGATCACAACAGCTTTTGCAGGCAATGN-GNCGACGGCGNCGTNGTTCGGTCA 99 consensus_9983#1 AGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGG-GGCGGCGTTCGGTCA 224 ********************************** * ****** * ** ********* consensus_9983#0 GGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCA 600 consensus_9983#2 GGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGG-CGACGCCCTTGGTCCA 158 consensus_9983#1 GGCGAAN-GCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCA 283 ****** ************************ ***** * ** **************** consensus_9983#0 CATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCG 660 consensus_9983#2 CATGTNATGCTCTCTCTGN-TGCCGNACTCGAACTCGATCACNC--CGGTNC-CGGTGCG 214 consensus_9983#1 CATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCG 343 ***** ************ ***** **************** * * * * ******* consensus_9983#0 GAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGC 720 consensus_9983#2 GAGCCCGAAGTACCGCCGGTN-TCGCNGCCCTCTAGCAGGT--CCTCCCGGCCACGCCGC 271 consensus_9983#1 GA-CCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGC 402 ** ***************** **** ************** * ************** consensus_9983#0 CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTC-TTGGTGAGCGTGCCCGCGA 779 consensus_9983#2 CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN-------- 323 consensus_9983#1 CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT------------------ 444 **************************************** * consensus_9983#0 CGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCA 839 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 CCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGA 899 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGG 959 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 CGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGAT 1019 consensus_9983#2 ------------------------------------------------------------ consensus_9983#1 ------------------------------------------------------------ consensus_9983#0 GCTGCTGCT 1028 consensus_9983#2 --------- consensus_9983#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||