These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2055 fasta sequence [CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAGCCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGGGAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGATGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGGATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGGAGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTATCATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTGCAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGTCATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGGGCTCTTCATCCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTAT-CGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTTCGCGCTGT-TCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGCCG-CCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAAGGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK070788 [CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAGCCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGGGAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGATGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGGATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGGAGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTATCATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTGCAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGTCATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGGGCTCTTCATCCCCAGGCTCAACGGCGACGGCGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTAT CGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTTCGCGCTGT TCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTACGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGCCG CCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAAGGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCC ] [+] EMBL AA750229 [ GTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAG ] [+] EMBL CA757042 [ AGGAGGTGATGAAGGGGCTCTTCATGCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGCGCTATCCGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTACTGTACGAGAGCGGGTTCGCGCTGG TCGGGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGGCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCNTCCCAAGTACGCCAACGTGCTCGTCGGCGCCGNNCGTCTT CCG TCATGCTCGTCT CATCGGCGCCGTCGTCTA CTCACCATCAGGAA GACTCCGT ] [+] EMBL BE607374 [ AGGAGGNGATNAANGGGCTCTTCATCCCCAGGCTCAACNGNGACGGNGCCACCGNCGACNCCATTGCCCTCCTNGGAGCTCTTGTCATGCCCCACAANCTGTTCTTGCATTCTGCCTTGGTGCTAT CGAGGAAGACACCGGCATCAGNCAGAGGAATCAAGGACGGGNGCNGGTTCTTCCTGTACGAGAGCGGGTTCGNGCTGTATCGTGGCGCTGCTGATAAACATCGNCGTCGTCTTCGTCTCCGGCACCGCCTGCTCCTNCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTACTCCTT CTTCTNAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATG ] [+] EMBL AU070750 [ TTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCA ] [+] EMBL AU091988 [ GAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [CGAGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATTAATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761301 [CGAGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATTAATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9984#0 CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAG 60 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGG 120 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGA 180 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 TGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGG 240 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 ATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGG 300 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 AGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTAT 360 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTG 420 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGT 480 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCA 540 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 TATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCT 600 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGC 660 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGG 720 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GCTCTTCATCCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGG 780 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 AGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTATCGAGGAAGAC 840 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 ACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTT 900 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CGCGCTGTTCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTG 960 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACAC 1020 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGC 1080 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 ACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCAT 1140 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCAT 1200 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCT 1260 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCT 1320 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGT 1380 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAG 1440 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGC 1500 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 CGCCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAA 1560 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAA 1620 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCT 1680 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATA 1740 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 GCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATA 1800 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 TGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGG 1860 consensus_9984#1 ------------------------------------------------------------ consensus_9984#0 TCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTG 1920 consensus_9984#1 ----------------------CGA--GACAAGGGTGTGCAATTAATATATAAGCATTTG 36 *** ********************************* consensus_9984#0 AGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCA 1980 consensus_9984#1 AGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCA 96 ************************************************************ consensus_9984#0 GGGCAGAGCCAACGTCCTTCAATTTA----------------------AAAAAAAAAAAA 2018 consensus_9984#1 GGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATT 156 ************************* ** ** ** consensus_9984#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2055 consensus_9984#1 AATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA 193 ** ** ** * * ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||