These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATACACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATGATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAATACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATACAATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAGTCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTACACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAATT] [+] EMBL AI975244 [TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATACACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATGATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAATACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATACAATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAGTCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTACACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAATT] consensusID : consensus_10#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [AATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATACAATACGAACTAACTGTAGTAAACGACAAAAATTACAAAAGACGATTATCACAGCAGCGACAAAACAACATTTATTGCACAT] [-] EMBL AI381054 [AATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATACAATACGAACTAACTGTAGTAAACGACAAAAATTACAAAAGACGATTATCACAGCAGCGACAAAACAACATTTATTGCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10#0 TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATA 60 consensus_10#1 ------------------------------------------------------------ consensus_10#0 CACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATG 120 consensus_10#1 ------------------------------------------------------------ consensus_10#0 ATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAAT 180 consensus_10#1 ------------------------------------------------------------ consensus_10#0 ACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTAT 240 consensus_10#1 ------------------------------------------------AATCTTTATTAT 12 ************ consensus_10#0 TTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATAC 300 consensus_10#1 TTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATAC 72 ************************************************** * ******* consensus_10#0 AATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAG 360 consensus_10#1 AATACGAACTAA-CTGT-AGTAAACGA--CAAAAATTACAAAAG--ACGA-TTATCACAG 125 ************ **** *** ***** ************* **** ********* consensus_10#0 TCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTA 420 consensus_10#1 CAGCGAC-----AAAACAACA--TTTATTGCAC-AT------------------------ 153 *** ********* ********** ** consensus_10#0 CACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAA 480 consensus_10#1 ------------------------------------------------------------ consensus_10#0 TT 482 consensus_10#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||