These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1674 fasta sequence [ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACTATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTACTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCAATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC-GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT-CGTTGTCCTCGTGACGAGTCTTATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACANAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCAAATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC] [+] EMBL CD114247 [ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACTATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTACTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCAATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTAC ] [+] EMBL CD120743 [ CACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCG ] [-] EMBL CD148776 [ TAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACNCAAATTCCTGCTATGTTTGCCAGAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCT ] [-] EMBL CD110918 [ TAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTATTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCT ] [-] EMBL CD111054 [ TGTTTGCCAAAGTTCGTGAATTATTAGCACTACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAACTCCAGGCGTAATCGAAGGTATGCAACAATCGATGTACCCAATCGACTACAGACAATTGCTACTCCTCAGTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTGTCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTTTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTCTTGACTTGGGCACGTGCTAATGCATTGTCCTCATGACGAGTCa ] [+] EMBL CD115303 [ TTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCTTATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACANAATCAACAAACACAGCAACATCAACCA ] [+] EMBL CD111067 [ GTAACCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAACCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGACC ] [+] EMBL CD111506 [ CTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACAAAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGT ] [-] EMBL CD150400 [ AGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCATTTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAGAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCG ] [+] EMBL CD178748 [ TATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAACTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTCATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATG ] [+] EMBL CD168151 [ CAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAACTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTCCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCAAATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC] [+] EMBL CD120039 [ ATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGGTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGAC ] consensusID : consensus_10015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATTGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACGTAAGTTACAGTTATTGTTGGTTATTTTCGTTTAAAAATTGTATAATTTGACA] [-] EMBL CD120000 [CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATTGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACGTAAGTTACAGTTATTGTTGGTTATTTTCGTTTAAAAATTGTATAATTTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10015#0 ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACT 60 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTA 120 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 CTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCA 180 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGC 240 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 CTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATC 300 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAAT 360 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTAT 420 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCG 480 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATGTACCCAATCGACTACAAACAATTGCTACTCCTCGTATATCTCATGGTCAACAATCAT 540 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATA 600 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAG 660 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGAC 720 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 AATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAATCGTTGTCCTCGTGACGAGTCTT 780 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATG 840 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TTCCTGGACANAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTC 900 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 CTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATG 960 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAAC 1020 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAA 1080 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 GTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGA 1140 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 TTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTT 1200 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 ATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAG 1260 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 CATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAAC 1320 consensus_10015#1 ------------------------------------------------------------ consensus_10015#0 GTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAAT- 1379 consensus_10015#1 --------CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATT 52 *************************************************** consensus_10015#0 GTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCAT 1439 consensus_10015#1 GTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCAT 112 ************************************************************ consensus_10015#0 CCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTT 1499 consensus_10015#1 CCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTT 172 ************************************************************ consensus_10015#0 CGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCT 1559 consensus_10015#1 CGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCT 232 ************************************************************ consensus_10015#0 TCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCA 1619 consensus_10015#1 TCACGTAA---GTTACAGTTATTGTTGGTTATTTTCGTTTA---AAAATTGTATAATTTG 286 **** *** * * * ** * ** * * ***** * * ** consensus_10015#0 AATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC 1674 consensus_10015#1 ACA---------------------------------------------------- 289 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||