These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 613 fasta sequence [AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC-TTTTATATTAAACAGTTCTAGCGTAGTTTGA-TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNGACCTTCTTCAATA] [+] EMBL CD066427 [AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTACAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCCAAAATATTTTACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGAATGTACTAATAAA ] [+] EMBL CD066491 [ tgAAGATCTTTTTGATAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTGCTGGTACATCTGACTTGA ] [+] EMBL CD067115 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATCGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGATCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGACTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTGGAATTCAAAATAACAAATGGTCCAGGTAGATAATTTAAACTTT ] [+] EMBL CD066777 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTNTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAAT ] [+] EMBL CD066677 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCANGTAGATAAT ] [+] EMBL CD066690 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGT ] [+] EMBL CD067306 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTCTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCCTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATGAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAA ] [+] EMBL CD066709 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTACATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAtt ] [+] EMBL CD067118 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGTCAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTC ] [+] EMBL CD066827 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATCGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTCATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGAATTCA ] [+] EMBL CD066339 [ TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCAT ] [-] EMBL CD201606 [ TGTTCAACTTTTTATATTAAACAGTTCTAGCGTAG TTGATTCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATCCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTTCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNGACCTTCTTCAATA] consensusID : consensus_10027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [CAAGGTGGGGGTAGGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTGTCCTGGTACATA] [+] EMBL CD066675 [CAAGGTGGGGGTAGGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTGTCCTGGTACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10027#0 AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCAGGTGCACATTTCTC 60 consensus_10027#1 --------------CAAGGTGGGGGT-AGGATCTTTTTGATAACCACGTGCACATTTCTC 45 * ***** * * ***************** ************* consensus_10027#0 ACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTG 120 consensus_10027#1 ACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTG 105 ************************** ********************** ********** consensus_10027#0 TCCTGGTACATCTGACTTGACAGCATGTTCAACTTTTATATTAAACAGTTCTAGCGTAGT 180 consensus_10027#1 TCCTGGTACATA------------------------------------------------ 117 *********** consensus_10027#0 TTGATCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCAT 240 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 AAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCA 300 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATG 360 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGAT 420 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 AACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGAT 480 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 ATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGT 540 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNG 600 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 ACCTTCTTCAATA 613 consensus_10027#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||