These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1201 fasta sequence [AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTTTTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAATGANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTC-ATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAAC-TTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGG-TTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAAGTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTTT] [-] EMBL SM774 [AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTTTTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAATGANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTACGTAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTNATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTAT ] [-] EMBL SMAA14063 [ TTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGT ] [+] EMBL CD136844 [ ATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTC ] [+] EMBL CD152919 [ AAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTC ATATTACATCTNCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAAC CTATn ] [-] EMBL CD144828 [ AAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAGCTACATTGAAATCACGTTTTTTGACCATAAAAT ] [+] EMBL CD186822 [ TTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTAGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAACTTTCACTTGGGCA ] [+] EMBL CD184504 [ GTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTCAATATTACATCTCCAGGTTC ] [+] EMBL CD157141 [ ATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTCAATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAACTTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGG TTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATT ] [-] EMBL AA559580 [ TTTTCAATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAACTTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTNTGCGNAGACTAATTACTACTGGTTTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAAGTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTTT] consensusID : consensus_10032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 662 fasta sequence [AGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCAGTCCTCGTGCCGAATCTTGGCTC] [-] EMBL CD083180 [AGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCAGTCCTCGTGCCGAATCTTGGCTC] [-] EMBL CD182315 [ ACAGAAGGGGAAATGAAGGNAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATTTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT ] [-] EMBL AA804156 [ TAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACCACGGGTTATTATGGCACTGCAGGTTTAATTGGA ] consensusID : consensus_10032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [TGGATTGGTTATCATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT] [-] EMBL BG931629 [TGGATTGGTTATCATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10032#0 AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTT 60 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 TTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAAT 120 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 GANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGT 180 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 AAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGG 240 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ----------------------AGAGACTATTCAATCTATTTAGATAGTAATACATTGGG 38 consensus_10032#0 ACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATT 300 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATT 98 consensus_10032#0 ATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTA 360 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTA 158 consensus_10032#0 ATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACT 420 consensus_10032#2 ---------------------------------------TGGATTGGTTATCATGGCACT 21 consensus_10032#1 ATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACT 218 ** ****** ******** consensus_10032#0 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 480 consensus_10032#2 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 81 consensus_10032#1 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 278 ************************************************************ consensus_10032#0 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 540 consensus_10032#2 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 141 consensus_10032#1 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 338 ************************************************************ consensus_10032#0 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTG 600 consensus_10032#2 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCT------------------ 183 consensus_10032#1 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCT------------------ 380 ****************************************** consensus_10032#0 GCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 660 consensus_10032#2 ---CCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 240 consensus_10032#1 ---CCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 437 ********************************************************* consensus_10032#0 TTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 720 consensus_10032#2 TTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 300 consensus_10032#1 TTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 497 ************************ *********************************** consensus_10032#0 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 780 consensus_10032#2 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 360 consensus_10032#1 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 557 ************************************************************ consensus_10032#0 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 840 consensus_10032#2 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 420 consensus_10032#1 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 617 ************************************************************ consensus_10032#0 GCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCAT 900 consensus_10032#2 GCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT-------- 472 consensus_10032#1 GCTCTTAGAATTTCAGCTTTCAGTCCT-CGTGCCGAATCTTGGCTC-------------- 662 ********************** * * ** *** * consensus_10032#0 ATTTTCATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAA 960 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 CTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGA 1020 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 TTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGGTTCAAGTGCCATCAATGTTAT 1080 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 AATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAA 1140 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 GTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTT 1200 consensus_10032#2 ------------------------------------------------------------ consensus_10032#1 ------------------------------------------------------------ consensus_10032#0 T 1201 consensus_10032#2 - consensus_10032#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||