These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 688 fasta sequence [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCATGTTGCCTGATAGAAGAATTGTGATGAAG] [+] EMBL CD162527 [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGCTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCGCTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACGCTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAGCTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAG ] [+] EMBL CD162550 [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTTTCCAATTGAACCACCAAAAGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAG ] [+] EMBL CD186975 [ GGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTAT ] [+] EMBL CD186815 [ GGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTTGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCGCCNAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATT ] [+] EMBL CD078230 [ GTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCTCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGG ] [+] EMBL CD135755 [ TGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCAGTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTANAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCATGTTGCCTGATAGAAGAATTGTGATGAAG] [-] EMBL CD141579 [ cgnnAGG ATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACNCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCAGTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGA ] [-] EMBL CD193773 [ CAGAAGTCCATGCTTA TGGCCCGTTCGGGGACAACCAAAAATCAGTAGTCAGAAGTCCCATAAGNACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTA ] [+] EMBL CD136426 [ AGTACATGCTTATTGGCACGTTCGGAAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCG ] consensusID : consensus_10042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 169 fasta sequence [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG] [-] EMBL CD136429 [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG] [-] EMBL CD136397 [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT ] [-] EMBL CD136383 [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT ] [-] EMBL CD136402 [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10042#0 AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGT 60 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 ACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATG 120 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 AGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATG 180 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 GTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGG 240 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 CTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCG 300 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 TAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTA 360 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 TAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGT 420 consensus_10042#1 ------------------------------------------------------------ consensus_10042#0 TGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATG 480 consensus_10042#1 -----------------------------------------------------GTACATG 7 ******* consensus_10042#0 CTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGC 540 consensus_10042#1 CTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGC 67 ************************************************************ consensus_10042#0 ATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACAC 600 consensus_10042#1 ATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACAC 127 ************************************************************ consensus_10042#0 AACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCAT 660 consensus_10042#1 AACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG------------------ 169 ******************************** * * * * consensus_10042#0 GTTGCCTGATAGAAGAATTGTGATGAAG 688 consensus_10042#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||