These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1502 fasta sequence [GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCGCTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG-AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC-CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCTAATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGC-AGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATGATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACATTTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAATGGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATGTTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAATGACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTCCG] [-] EMBL CD113403 [GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCGCTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACATCATGTCTAGTGAGTAGTCGAAATAATTCCGATAGTTTAGCTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCGAAATAGTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTCATTTGTGATGTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTTTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGAATGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAA ] [-] EMBL CD118983 [ CTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTGA ] [+] EMBL CD149585 [ AGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTNTGATATATTTAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAACCCAAAAACATAACAATCTATACACC CNCACACTGATATTTAGTAT ] [+] EMBL CD149599 [ AGTAAAACGTTGTGCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTTTTAA ] [+] EMBL CD149192 [ AGTAAAACGTTGTCCGTTAGATTATTAAGAAATTTATCTCATGTCAAGTGAGTAGTCGAATTAATTCCGATAGTTTAAACATTGATTCATATTTCCATGTCCAGTCAACACGCAATATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTNTGATATATTTAGTATTAGAGGTCTAACATAGATCG ] [+] EMBL CD149484 [ AGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGA ] [-] EMBL CD125739 [ ATTCTAATANCCGAATAGTTTGAAAC ATTGAAAGTATACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTT CAAAATGAAGGATGCTGTGCATTATGCTTTGATATATTTAGTATTAGTGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATGCACCACCCA ] [+] EMBL CD148192 [ TTTGATATATTCAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAA ] [+] EMBL CD119025 [ TTTGATATATTCAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATTATACACTAAGAAATCTCGTGTAG ] [+] EMBL CD116550 [ TTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCTAATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGCAAGGTA ] [-] EMBL CD147853 [ GCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGC AGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATGATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACATTTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAATGGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATGTTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAATGACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTCCG] [+] EMBL CD154702 [ TAATACGCTGATACCATACCGTACAGC AGGTAGTTTAACTTGAATTATCTCTCTTGATATTAATGAATATGATAGATATAACCTGAAATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTCTACCTTTGTAACTTGGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTGATGGCATTGCATTTTGGAACGATTAATAACGGGTGTAATACTCATGAAT ] consensusID : consensus_10053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGACTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGGAAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCAACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTATAATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCTTATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAAA] [+] EMBL CD097850 [ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGACTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGGAAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCAACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTATAATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCTTATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10053#0 GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCG 60 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 CTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTC 120 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 AAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGT 180 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 CAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATAT 240 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 AACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTT 300 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 TTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAAT 360 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 AACCGAATAGTTTAAAACAATTGAAGTACACTGACATACTTTGCAGACTGATTCTTCTAT 420 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 TAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAA 480 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 AAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTG 540 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 ATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACCCCCACACTGATATTTA 600 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 GTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGAT 660 consensus_10053#1 --ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGAT 58 ********* *********************************************** consensus_10053#0 GAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGA 720 consensus_10053#1 GAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGA 118 ************************************************* ********** consensus_10053#0 CTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGG 780 consensus_10053#1 CTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGG 178 ** ********** ***** ************ ************* ************ consensus_10053#0 AAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCA 840 consensus_10053#1 AAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCA 238 **** ************* *** ***** ************* ** ***** ******* consensus_10053#0 ACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCA 900 consensus_10053#1 ACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCA 298 ************ *********************************************** consensus_10053#0 ACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTAT 960 consensus_10053#1 ACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTAT 358 ** ************************************************** ****** consensus_10053#0 TTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCT 1020 consensus_10053#1 A-ATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCT 417 ************************* ********************** * ***** consensus_10053#0 AATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAA 1080 consensus_10053#1 TATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAA 477 ****************** ******* * ***** **** * ** ************ consensus_10053#0 GTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGA 1140 consensus_10053#1 A----------------------------------------------------------- 478 consensus_10053#0 TACCACACCGTACAGCAGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATG 1200 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 ATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACAT 1260 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 TTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAAT 1320 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 GGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATG 1380 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 TTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAAT 1440 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 GACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTC 1500 consensus_10053#1 ------------------------------------------------------------ consensus_10053#0 CG 1502 consensus_10053#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||