These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 708 fasta sequence [TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA-TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT-CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA] [+] EMBL CD113515 [TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAGAACTTGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTC ] [-] EMBL CD113585 [ GCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACGTAACTTTTGGAGAATTGTTCTACATGAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTCTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCTTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATGCATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCC ] [+] EMBL CD111482 [ GTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGGAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAG ] [+] EMBL CD186213 [ TTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTT ] [+] EMBL BF936051 [ TTGAGCAC CTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTC ] [-] EMBL CD128969 [ TGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATTATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCA GTTTGCCAGTCGGTTAAACA ] [+] EMBL CD130484 [ GCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGNAAACTGACCCTTCTGATAATCCAG AAATACCGATCCCATTGAANCAGC GCTGAAANTGC TTATGGACTAATACATTCTAGATACATTCTGACAAATCCGT GTATTTNGTTTATGnt ] [-] EMBL CD128875 [ AACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCA ] [+] EMBL CD134934 [ CCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCATCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCGTGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA ] [-] EMBL CD186913 [ TCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACTCCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTC ] [-] EMBL CD130059 [ CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA] [-] EMBL CD130096 [ CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA] consensusID : consensus_10069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA] [+] EMBL CD084114 [TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10069#0 TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTAT 60 consensus_10069#1 ------------------------------------------------------------ consensus_10069#0 TATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGG 120 consensus_10069#1 ------------------------------------------------------------ consensus_10069#0 AGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTT 180 consensus_10069#1 ------------------------------------------------------------ consensus_10069#0 GCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGAT 240 consensus_10069#1 ------------------------------------------------------------ consensus_10069#0 TCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATAC 300 consensus_10069#1 ------------------------------------------------------------ consensus_10069#0 TTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGG 360 consensus_10069#1 --------------------------------------------------------TCGG 4 *** consensus_10069#0 CTGAAATGCTTTATGGACTAATACATTCTAGATACATTCTGACAAATCGTGGTATTTGTT 420 consensus_10069#1 CACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTT-----ACTGCAAGACT-GTT 58 * * ** *** ** ** **** *** * * * * * * *** consensus_10069#0 TTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATA-CTGTGAA 479 consensus_10069#1 C---GGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTA 115 ** ***** * ** * * ** * * ** * consensus_10069#0 AGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA 539 consensus_10069#1 TGTTATGCCTGTACGCC--CTGGTTTTTCAAAACGTGC--ATAAAATTATAAAAAAGGAC 171 * * * *** *** ***** *** * * * * ** *** *** consensus_10069#0 TATTGTCCTAGATGTCAAGATACCTATAC-ACCGAAATCTACTCGTCATCATCATACAGA 598 consensus_10069#1 TTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATT 231 * * * * *** * * * * ** * * * * * * * consensus_10069#0 TGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAG 658 consensus_10069#1 TGTACTGTTGTTATTGTTTTTTTTTCTCCACAT-CTTTTGTGAATTCATCAATTAAAAAG 290 ** * ** ** * **** ** ** ** ** * * ****** * * ** consensus_10069#0 ACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA 708 consensus_10069#1 AGAAATATTATTTGA----------------------------------- 305 * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||