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Schistosoma mansoni
cluster # 10069 cluster # 10069       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10069#0 length = 708 sequences # 12  
consensus_10069#1 length = 305 sequences # 1  

consensusID : consensus_10069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 708
fasta sequence
                              [TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA-TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT-CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]

[+] EMBL CD113515             [TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAGAACTTGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTC                                                                                                                                                                                                                                                      ]
[-] EMBL CD113585             [ GCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACGTAACTTTTGGAGAATTGTTCTACATGAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTCTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCTTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATGCATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCC                                                                                                                                                                                                                                                     ]
[+] EMBL CD111482             [            GTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGGAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAG                                                                                                                                                                                                                                                                        ]
[+] EMBL CD186213             [             TTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTT                                                                                                                                                                                                                                                                 ]
[+] EMBL BF936051             [                                      TTGAGCAC     CTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTC                                                                                                                           ]
[-] EMBL CD128969             [                                       TGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATTATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCA GTTTGCCAGTCGGTTAAACA                                                                                                                                                                                                       ]
[+] EMBL CD130484             [                                          GCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGNAAACTGACCCTTCTGATAATCCAG AAATACCGATCCCATTGAANCAGC GCTGAAANTGC TTATGGACTAATACATTCTAGATACATTCTGACAAATCCGT GTATTTNGTTTATGnt                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD128875             [                                                                                                          AACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCA                                                                                                                                                                                                       ]
[+] EMBL CD134934             [                                                                                                                                                                                                                                           CCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCATCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCGTGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA                                                                                                                                                                         ]
[-] EMBL CD186913             [                                                                                                                                                                                                                                                                                                                                                       TCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACTCCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTC                                                               ]
[-] EMBL CD130059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]
[-] EMBL CD130096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]


>consensus_10069#0 TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTAT TATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGG AGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTT GCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGAT TCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATAC TTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGG CTGAAATGCTTTATGGACTAATACATTCTAGATACATTCTGACAAATCGTGGTATTTGTT TTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAA GCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATAT ATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATG GAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGAC CAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA



consensusID : consensus_10069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence
                              [TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA]

[+] EMBL CD084114             [TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA]


>consensus_10069#1 TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCG GCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTA TGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTT GATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTT GTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTA TTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10069#0      TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTAT 60
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#0      TATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGG 120
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#0      AGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTT 180
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#0      GCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGAT 240
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#0      TCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATAC 300
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#0      TTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGG 360
consensus_10069#1      --------------------------------------------------------TCGG 4
                                                                                ***

consensus_10069#0      CTGAAATGCTTTATGGACTAATACATTCTAGATACATTCTGACAAATCGTGGTATTTGTT 420
consensus_10069#1      CACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTT-----ACTGCAAGACT-GTT 58
                       *   *      **  *** ** **   ****  *** * *     *  *    * * ***

consensus_10069#0      TTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATA-CTGTGAA 479
consensus_10069#1      C---GGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTA 115
                           **    *****     *   **  * *    **   *   *        **    *

consensus_10069#0      AGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA 539
consensus_10069#1      TGTTATGCCTGTACGCC--CTGGTTTTTCAAAACGTGC--ATAAAATTATAAAAAAGGAC 171
                        *  *  * ***  ***    ***** *** *   * *   * **  ***    ***   

consensus_10069#0      TATTGTCCTAGATGTCAAGATACCTATAC-ACCGAAATCTACTCGTCATCATCATACAGA 598
consensus_10069#1      TTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATT 231
                       * *  *  *   ***    *  *   *   *   **   *  * *  *  *  *   *  

consensus_10069#0      TGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAG 658
consensus_10069#1      TGTACTGTTGTTATTGTTTTTTTTTCTCCACAT-CTTTTGTGAATTCATCAATTAAAAAG 290
                       ** *  **  **      *   ****  ** ** ** ** * * ****** *    * **

consensus_10069#0      ACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA 708
consensus_10069#1      AGAAATATTATTTGA----------------------------------- 305
                       *  ** *  *  *                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)