These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 976 fasta sequence [GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT-AAGTAATAATATTTAGAAATAACGTCTACACTGG-TG-TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT-AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA] [-] EMBL CD117475 [GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATA ] [+] EMBL CD201974 [ GTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTTCATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGNGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAANAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGG AAAACANAACAACCCATCCTCTAATATTACTCAGTGAATAAAAGAATGAAACAACTCANAGTCTGAATTAATAAAGT ATAATATTTAGAAATAACGTCTACACTGGNTG TAACGATAATGATGANTATAATAAATAACGGCTGTTTGTAAGCGCGCACATAATCTTT ATAAATAAAAACGGTAGACNATAAAGAAAT CGAGCCCTCTAAAACGAAACAATAATGGTact ] [-] EMBL CD117385 [ ATTAGTACTATTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGTCTGAATGGAACAGAGCAACAAACAAAAAACAAGAACTTATGTTTGTTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATA ] [+] EMBL CD098468 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTCTACACTGG TGTTAACGATAATGATGATNATAATAGATAACGGCTGTTTGTAGGCGCGCACATt ] [+] EMBL CD098422 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAAACAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTCATAATATTTAGAAATAACGTC ] [+] EMBL CD111213 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTC ] [+] EMBL CD111312 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACTGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAGTGAAAATAAGAAACAGGATAC ] [+] EMBL CD168990 [ GTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTCTACACTGG TGTTAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGAtttctt ] [+] EMBL CD119546 [ TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA] [+] EMBL CD119382 [ TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA] consensusID : consensus_10072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [TTAACGGTAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTATGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGTGAAATTCTGAGTAGTTTCAATAGTGGTATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAGAAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATAATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACTATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCTACTTATTGAATAACAA] [+] EMBL CD184222 [TTAACGGTAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTATGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGAT ] [+] EMBL CD067144 [ GGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGTGAAATTCTGAGTAGTTTCAATAGTGGTATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAGAAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATAATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACTATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCTACTTATTGAATAACAA] consensusID : consensus_10072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [GGACAAACCGTCGGAGTGAATACAGACAGAGATACAGATGATGGTAACAGGTACTTACTTTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGCGAAATTTTGAGTAGTTATATTATTGACATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATG] [+] EMBL CD067145 [GGACAAACCGTCGGAGTGAATACAGACAGAGATACAGATGATGGTAACAGGTACTTACTTTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGCGAAATTTTGAGTAGTTATATTATTGACATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10072#1 ------------------------------------------------------------ consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTT 60 consensus_10072#1 ----------------------TTAACGGTAATGATGATAATAATAAATAACGGCTGTTT 38 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 AATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTT 120 consensus_10072#1 GTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCT 98 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 TTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTA 180 consensus_10072#1 CTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGA 158 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 TTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGA 240 consensus_10072#1 TAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCA 218 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 GTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAA 300 consensus_10072#1 GAAGAATCTGTAGGA-CAAACCGTATGAATGAAT---ACAGAGAGAGAGAGAGATGATAA 274 consensus_10072#2 ------------GGA-CAAACCGTCGGAGTGAAT---ACAGACAGAGATACAGATGATGG 44 consensus_10072#0 GCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAA 360 * ** * ** ***** ***** * * * * * * consensus_10072#1 TAACAAGTACTTACATT-TGAACCACTATAGAATAAAACTGATGTGGCAATAAA---GAT 330 consensus_10072#2 TAACAGGTACTTACTTT-TGAACCACTATAGAATAAAACTGATGTGGCAATAAA---GAT 100 consensus_10072#0 GAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGG-GTAATAGTGAACATGAT 419 *** * ** * **** * * * * **** ** ** * * ** *** consensus_10072#1 TTGTGTTGTGAAAT--------TCTGAGTAGTTTCAATAGTGGT----ATTCGTAGTAGT 378 consensus_10072#2 TTGTGTTGCGAAAT--------TTTGAGTAGTTATATTATTGAC----ATTCGTAGTAGT 148 consensus_10072#0 GTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAAT 479 * * ** * ** ** * ** * * ** *** ** ** * consensus_10072#1 AG-TGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAG 437 consensus_10072#2 AG-TGGTGGTAACTTTAGTTATG------------------------------------- 170 consensus_10072#0 TGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAA 539 * ***** * ** * consensus_10072#1 AAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATA 497 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 CAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTA 599 consensus_10072#1 ATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACT 557 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 CTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAATAAGTAATAATATTTAGA 659 consensus_10072#1 ATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCT 617 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 AATAACGTCTACACTGGTGTAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAG 719 consensus_10072#1 ACTTATTGAATAACAA-------------------------------------------- 633 consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 GCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAATAAGAAATCCGAGCCCTCTAA 779 consensus_10072#1 ------------------------------------------------------------ consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 AACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGT 839 consensus_10072#1 ------------------------------------------------------------ consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 AGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAG 899 consensus_10072#1 ------------------------------------------------------------ consensus_10072#2 ------------------------------------------------------------ consensus_10072#0 AATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAG 959 consensus_10072#1 ----------------- consensus_10072#2 ----------------- consensus_10072#0 TGTATTTTTGAATTGGA 976 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||