These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1380 fasta sequence [CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAATGGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATTACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACGTTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAAATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATACGGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCATTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGAATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTAGTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTGCATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA] [+] EMBL CD079472 [CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAATGGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATTACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTA ] [+] EMBL AA559633 [ AGAAAACTCTNCCAGCTGCACAAAAAGAATTGAATGATATAATNACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTGTCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACNCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCNATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACNTAATCTAGAAACA ] [+] EMBL CD089970 [ TACTCATTGATTAGTGGAAGAGACGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGC ] [-] EMBL CD090010 [ ACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACACCAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTCTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCT ] [-] EMBL CD196032 [ AAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATNTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGA ] [-] EMBL CD059513 [ ATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGGATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATTGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGA ] [+] EMBL CD139870 [ AACAAATCAAAAATTATCACTAGAAGATCAACTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGAT ] [+] EMBL CD139904 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAAC AATTGAGG ATGTCGTAGATGTTTTA ] [+] EMBL CD140013 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTA ] [+] EMBL CD139913 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATAT AAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGgt ] [-] EMBL CD073742 [ TTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACGTTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAAATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATACGGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCATTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGAATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTAGTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTGCATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA] [-] EMBL CD139174 [ CATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGG ] consensusID : consensus_10081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GTTATCCCAACACAGAGCAGTGAAAAAACTGATTCAATCGCATATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGG] [+] EMBL CD126678 [GTTATCCCAACACAGAGCAGTGAAAAAACTGATTCAATCGCATATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10081#0 CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAAT 60 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATT 120 consensus_10081#1 ------------------------------------------------------GTTATC 6 * ** consensus_10081#0 ACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTA 180 consensus_10081#1 CCA-ACACAGAGCA-GTGAAAAAACTGATTCAATCGCATA-TTTATCATCAGAATTATTA 63 ** * ******* ************************* ******************* consensus_10081#0 AAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTAC 240 consensus_10081#1 AAAAATCCATACACAATGATTGAT-GCTCTACATTACAAAGTAGATGGGATGCAATGTAC 122 ************************ *********************************** consensus_10081#0 TCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAAT 300 consensus_10081#1 TCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAAT 182 ************************************************************ consensus_10081#0 GATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACAT 360 consensus_10081#1 GATAA-GTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACAT 241 ***** ****************************************************** consensus_10081#0 AATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTA 420 consensus_10081#1 AATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTA 301 ************************************************************ consensus_10081#0 CAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTA 480 consensus_10081#1 CAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTA 361 ************************************************************ consensus_10081#0 GAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATAT 540 consensus_10081#1 GAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATAT 421 ************************************************************ consensus_10081#0 ACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAA 600 consensus_10081#1 ACAATGG----------------------------------------------------- 428 ******* consensus_10081#0 AATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATT 660 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCG 720 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 TTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGT 780 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACG 840 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 TTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAA 900 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 ATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTG 960 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 AAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAAT 1020 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATAC 1080 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCA 1140 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 TTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGA 1200 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 ATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTA 1260 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 GTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTG 1320 consensus_10081#1 ------------------------------------------------------------ consensus_10081#0 CATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA 1380 consensus_10081#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||