These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 834 fasta sequence [GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATTACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC-TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT-CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGGTTNGCAGNATTNNTGNCTGGTC-TTG-AATATA-TTCTACACATGTATACCGGT-AATCGA-TAANTNNCTTTATT] [+] EMBL CD081946 [GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATTACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGNCATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCTNCCTC TTCTTCAGCTNTT AAAATGACAAAAAATGTACCTTAAGCTACTGNTAGTGGTTNGCAGNATTNNTGNCTGGTC TTG AATATA TTCTACACATGTATACCGGT AATCGA TAANTNNCT ] [+] EMBL CD082864 [ TCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGNCATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCC ] [+] EMBL CD187528 [ ctttTTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATGCTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAA ] [+] EMBL CD191524 [ CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAG ] [+] EMBL CD185279 [ CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACCGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTT ] [+] EMBL CD185400 [ CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGACCACTATTTTGAATAGCTTATCAGTTTTCCTCAATTTCCCTTTCT CCTCTTTCTTCAGCTT ] [-] EMBL CD076450 [ GTAACACCATGGCNTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGCCAGTATTTTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTAAAT TCCTTATT] [-] EMBL CD139755 [ CATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGC ] [-] EMBL CD138193 [ ATTCACTTAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTgtctc ] [+] EMBL AA952772 [ TGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATAC TCTGTTCAGTGAACTTTTACAAACC ] [+] EMBL SMAA98641 [ TGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCAGGCTTTAATGTATTATATAC TCTGTTCAGTGAACTTTTACAAACC ] consensusID : consensus_10094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTACAAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGTTGAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGTTTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTNGCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA] [+] EMBL CD195960 [TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTACAAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGTTGAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGTTTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTNGCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA] consensusID : consensus_10094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [AATTCATATGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTCAGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGGCAGTATTGTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTANCTTCCTTAT] [+] EMBL SM698 [AATTCATATGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTCAGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGGCAGTATTGTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTANCTTCCTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10094#0 GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATT 60 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 ACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACA 120 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 GACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGC 180 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 CTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATT 240 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 CAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTA 300 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 ATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACAT 360 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 TATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTA 420 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 CAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAA 480 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 TTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAACTTTACAAA 540 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------------------------------------------------------ consensus_10094#0 CCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTAT 600 consensus_10094#2 ------------------------------------------------------------ consensus_10094#1 ------------TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTAC 48 consensus_10094#0 CTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATA-- 658 consensus_10094#2 --------------------------------------------------AATTCATA-- 8 consensus_10094#1 AAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGT 108 *** ** consensus_10094#0 TGAGCACTATTTTG-AATAGCTTATCAGTTTTCCTCGATTTCCCTTTCTCCTCTTTCTTC 717 consensus_10094#2 TGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTC 68 consensus_10094#1 TGAGAGTGGAGATG-GCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGT--TC 165 **** ** * * * ** * ** * ** * * * ** consensus_10094#0 AGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGT-GGTTNGCAGNATTNN 776 consensus_10094#2 AGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGT-GTTTGGCAGTATTGT 127 consensus_10094#1 AGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTC 225 ** * **** * ** * ** * * ** ** * ** ** ** consensus_10094#0 TGN--CTGGTCTT--GAATATATT----CTACACATGT--ATACCGGTAA-TCGATAANT 825 consensus_10094#2 TGT--CTGTTCTTTGAAATATATT---TCTACACATGT--ATACCGGTAAATCGATTANC 180 consensus_10094#1 TACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGT 285 * * * *** * * * **** ** * * * * * * consensus_10094#0 NNC-TTTATT-------------------------------------------------- 834 consensus_10094#2 TTC-CTTAT--------------------------------------------------- 188 consensus_10094#1 TTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTN 345 *** consensus_10094#0 ------------------------------------------------------ consensus_10094#2 ------------------------------------------------------ consensus_10094#1 GCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA 399 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||