These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 835 fasta sequence [GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA-TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA-CTACAGTAC-TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT] [+] EMBL CD186887 [GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAAC ] [+] EMBL CD187440 [ AATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCCTTCACAT ] [+] EMBL CD202240 [ AATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACG ] [-] EMBL CD186504 [ ATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTC ] [+] EMBL CD169882 [ ATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACC ] [-] EMBL CD187531 [ ATGGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGG ] [+] EMBL CD179378 [ TCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAATTTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACA ] [-] EMBL CD167565 [ GACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAAC TCAca ] [+] EMBL CD185619 [ GAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTATCTCTATAATACGATAAT AACCACCTACAcg ] [+] EMBL CD129231 [ AACCA CTACAGTACTTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAAT ] [+] EMBL CD191801 [ CGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT] consensusID : consensus_10119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [GAAGTGACAACAGCAGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACTGATTATTCTGATGACATAATTTTTCCAGCCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCA] [+] EMBL CD194709 [GAAGTGACAACAGCAGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACTGATTATTCTGATGACATAATTTTTCCAGCCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCA] consensusID : consensus_10119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [ATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN] [+] EMBL CD195769 [ATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10119#0 GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTT 60 consensus_10119#2 ------------------------------------------------------------ consensus_10119#1 ------------------------------------------------------------ consensus_10119#0 GTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGG 120 consensus_10119#2 ------------------------------------------------------------ consensus_10119#1 ------------------------------------------------------------ consensus_10119#0 TTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGA 180 consensus_10119#2 ------------------------------------------------------------ consensus_10119#1 ----------------------------------------------GAAGTGACAACAGC 14 consensus_10119#0 TGACATAATTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTAC 240 consensus_10119#2 ------------------------------------------------------------ consensus_10119#1 AGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAAC 74 consensus_10119#0 TGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATC 300 consensus_10119#2 ------------------------------------------------------------ consensus_10119#1 GGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATC 134 consensus_10119#0 AACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGA 360 consensus_10119#2 -----------------------------ATCATTCACATGATTCGACTATAGCGACAGA 31 consensus_10119#1 AACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGA 194 ******************************* consensus_10119#0 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 420 consensus_10119#2 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 91 consensus_10119#1 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 254 ************************************************************ consensus_10119#0 AACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAAC 480 consensus_10119#2 AACGAAAGAAACAAC--------------------------------------------- 106 consensus_10119#1 AACGAAAGAAACAACGGC------------------------------------------ 272 *************** consensus_10119#0 AACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGAT 540 consensus_10119#2 ---AGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGAT 163 consensus_10119#1 ---AGGAGTGACAACAACGGAAGTG--------ACTGATTATTCTGATGACATA-ATTTT 320 ** ***** ***** *** ** * * ** * *** * ** * consensus_10119#0 CACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTA 600 consensus_10119#2 CACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTA 223 consensus_10119#1 TCCAGCCATTA-ATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATAT- 378 ** * ** * *** * *** * * * * * * * * * * consensus_10119#0 CTGTTTTCTATTTCAA--AGCGATATAAT--GTTTCAAGTTTTCTATAATAGTCACAGCA 656 consensus_10119#2 CTGTTTTCTATTTCAA--AGCGATATAAT--GTTTCAAGTTTTCTATAATAGTCACAGCA 279 consensus_10119#1 TTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACA 438 * * * *** * **** * * * ** * * *** ** consensus_10119#0 AACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCG 716 consensus_10119#2 AACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCG 339 consensus_10119#1 GTACTTCCAAACACAACAGATCA--TTCACATGATTCGACTAT-AGCGACAGAAACAACG 495 *** *** ** ** * * ** * ***** * *** * * * ** consensus_10119#0 TATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAG 776 consensus_10119#2 TATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN----------- 388 consensus_10119#1 TCA--------------------------------------------------------- 498 * consensus_10119#0 AGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT 835 consensus_10119#2 ----------------------------------------------------------- consensus_10119#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||