These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 718 fasta sequence [TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC-CATATGATCCAGCAACAGCACATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATGGGGCCCTCAA] [-] EMBL CD136049 [TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGT ] [-] EMBL CD144355 [ ACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACT ] [+] EMBL AI740365 [ AACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACAGCACATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATGGGGCCCTCAA] [-] EMBL CD157203 [ CAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCACGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAAAAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATCACATATGATCCAGCAACA ] [+] EMBL CD090235 [ AGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAAC ] [-] EMBL CD157101 [ GCTCAAGAAGTTGCTACATCGGATGCTTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCCTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACAGACGGACTCTTGTTTATC CATATGATCCAGCAACA ] [-] EMBL CD157159 [ GCTCAAGAAGTTGCTACATCGNATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATC CATATGATCCAGCAACA ] [-] EMBL CD157167 [ GCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGGTCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACA ] [-] EMBL CD157218 [ GCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACA ] [-] EMBL CD157180 [ CCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAGCAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATC CATATGATCCAGCAACA ] consensusID : consensus_10129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 631 fasta sequence [TGGGATAAGGCGTTAAGTAAAAATGAAAAATACATATGGTTTCATCAGTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGTTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTTGTATA] [+] EMBL CD097136 [TGGGATAAGGCGTTAAGTAAAAATGAAAAATACATATGGTTTCATCAGTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCGTCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGC ] [-] EMBL CD122761 [ AACAGAGGGTTGTCGCTGGTACCAGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGTTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTT ] [-] EMBL CD123139 [ GTGAACATTTTATTGCTTCTTTCGCTGGGTCATCAGTAGAATTATATGACGCTCCAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGCTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTTGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10129#0 TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTG 60 consensus_10129#1 --------TGGGATAAGGCGTTAAG----TAAAAATGAAAAATACATATGGTT-TCATCA 47 ****** **** * * * ** * *** * * * * * consensus_10129#0 CTGTTAAACCATAT-ACCATTTCCTCAAC----GGTCCTAGAAGAAATAACATGTTTAGC 115 consensus_10129#1 GTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAA 107 * * * *** *** ** * * *** *** * * * * ** * consensus_10129#0 AATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTG 175 consensus_10129#1 ATGTTTCTTGCGATTTGGTTT---CACCTAAGCTCTTAGAACTATCATCAGAAAATCCAG 164 * * * * ****** * ** * * * **** * * *** * consensus_10129#0 GTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTT 235 consensus_10129#1 TCAT------CAACAAATTTTTTCAGTG-----TCCAGA---TTCCTCCTTTGACATTTC 210 ** *** * * * *** ** *** * * * * ** * consensus_10129#0 GATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCA 295 consensus_10129#1 GAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGG 270 ** * * ** * * ** * * ** ** * *** * *** ** consensus_10129#0 GAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGC 355 consensus_10129#1 TGAACATTTTATTGCTTCTT-----TCACTGGGT-------CATCAGTAGAATTATATGA 318 ** ** * ***** * * ** * ** *** ** * ** ** consensus_10129#0 CTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAG 415 consensus_10129#1 CGCTCA-AACGGGGAATATTCGGCGTTCTCTTGAAGG--TCATGTTGGAGATGTATATAC 375 * ** * * * * * ** ** * * *** * ****** ** consensus_10129#0 AAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCT 475 consensus_10129#1 CTGCAGATTTTTT--CCATCTGGGCTAG-----TTGCACTCACAGCAGGCAGTGATATGC 428 * * *** * * * *** *** ** * ** ** ** * consensus_10129#0 TGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGA---AAA 532 consensus_10129#1 AG--TTAAAAATTTGGTGTCTCATTAC-TGGTCGTTGTG-CAGCT-ACTCTTGGTTTAAA 483 * * * *** * * **** ** *** * **** ** *** consensus_10129#0 AGGTGCTG-TTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTG 591 consensus_10129#1 TTGTACTGATTCTAATAATAAAAATGAGCCAG-GAGGTCATAGGACTGGTATCCTGGACA 542 ** *** *** * **** ** * * *** * ** * * * ** consensus_10129#0 TTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATCCATATGATCCAGC---AACAGCAC 648 consensus_10129#1 CCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGC 602 * ** * * * ** ** * * *** ** * * ** * ** * * consensus_10129#0 ATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATG 708 consensus_10129#1 TATGGGATGTGGCGACACAAACTTGTATA------------------------------- 631 * **** * * * * * ** * consensus_10129#0 GGGCCCTCAA 718 consensus_10129#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||