These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATAAAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGTCCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATTTTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACTTCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATTTCGCAGACTATCAGAACACACTTAGAGTATTGCTTGCCTC] [+] EMBL CD127633 [TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATAAAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGTCCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATTTTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACTTCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATTTCGCAGACTATCAGAACACACTTAGAGTATTGCTTGCCTC] consensusID : consensus_10131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 490 fasta sequence [ATAGTTGTTGTAGCGTTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT-CAAGATGTTGAGGGACAAC-GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT-TTATAG-GACTATCA-GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGTGGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAAAGAATTGGCCTGCTGATACAATTAAGACA] [+] EMBL CD125781 [ATAGTTGTTGTAGCGTTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC ] [+] EMBL CD128077 [ AGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTC ] [-] EMBL CD062796 [ GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGTGGGC ] [+] EMBL CD062734 [ GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATAGACTGTTGCCACCGAATCCTCAAAATGCAAGATGCTGAGGGACAACTGAGTTATTTCAAACCTTTATCAACTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTCTTATAGCGACTATCATTAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTACGCTTAGCATGCTTGAATTTC ] [+] EMBL CD062783 [ GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC ] [-] EMBL CD062822 [ TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTC TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACAGACCTACTGTAGGCTTAGCATGC TGAATTTCGGTTTTGTnctnc ] [-] EMBL CD062829 [ TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCA GCTTGAATTTCGGTTTTGTnct ] [-] EMBL CD062786 [ TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATT ] [-] EMBL CD132047 [ GACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGG ] [+] EMBL CD179287 [ AATGTCTCTCCAAGATCTTAACGAGAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGAAGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAAAGAATTGGCCTGCTGATACAATTAAGACA] consensusID : consensus_10131#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TACCCAATAAGAACGCCCACGGNACAAATAAGGGTTCCTTTTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC] [+] EMBL CD062800 [TACCCAATAAGAACGCCCACGGNACAAATAAGGGTTCCTTTTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC] consensusID : consensus_10131#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [CCATATTAATTCTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAGTTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCTTGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC] [+] EMBL CD062729 [CCATATTAATTCTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAGTTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCTTGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10131#1 ------------------------------------------------------------ consensus_10131#2 ------------------------------------------------------------ consensus_10131#3 ------------------------------------------------------------ consensus_10131#0 TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATA 60 consensus_10131#1 ------------------------------------------------------------ consensus_10131#2 ------------------------------------------------------------ consensus_10131#3 ------------------------------------------------------------ consensus_10131#0 AAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGT 120 consensus_10131#1 ---------------------------------------------ATAGTTGTTGTAGCG 15 consensus_10131#2 ------------------------------------------------------------ consensus_10131#3 ------------------------------------------------------------ consensus_10131#0 CCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATT 180 consensus_10131#1 TTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCC 75 consensus_10131#2 ------------------------------------------------------------ consensus_10131#3 ------------------------------------------------------------ consensus_10131#0 TTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCC 240 consensus_10131#1 CCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGG------- 128 consensus_10131#2 --------------------TACCCAATAAGAACGCCCACGGNACAAATAAGG------- 33 consensus_10131#3 -------------------------------CCATATTAATTCTCTCCTCAGG------- 22 consensus_10131#0 CCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACT 300 * * *** consensus_10131#1 -------------------------GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 163 consensus_10131#2 -------------------------GTTCCTTTTATACTCTCCATGAGCGCCAACTTCTG 68 consensus_10131#3 -------------------------GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 57 consensus_10131#0 TCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 360 ****** *************************** consensus_10131#1 GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 221 consensus_10131#2 GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 126 consensus_10131#3 GGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAG 117 consensus_10131#0 GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 418 ***** ************************************* * ************* consensus_10131#1 TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 281 consensus_10131#2 TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 186 consensus_10131#3 TTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 177 consensus_10131#0 TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 478 ********************* ************************************** consensus_10131#1 TCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCT 341 consensus_10131#2 TCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCT 246 consensus_10131#3 TCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCT 237 consensus_10131#0 TCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATT--T 536 ***** ************************** ** ** * * *** * ** * consensus_10131#1 TGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCC 401 consensus_10131#2 TGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC------------- 293 consensus_10131#3 TGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC------------- 284 consensus_10131#0 CGCAGACTATCAGAACAC--ACTTAGAGTATTGCTTGCCTC------------------- 575 ** *** **** *** * * * *** * consensus_10131#1 GTGGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAA 461 consensus_10131#2 ------------------------------------------------------------ consensus_10131#3 ------------------------------------------------------------ consensus_10131#0 ------------------------------------------------------------ consensus_10131#1 AGAATTGGCCTGCTGATACAATTAAGACA 490 consensus_10131#2 ----------------------------- consensus_10131#3 ----------------------------- consensus_10131#0 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||