These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1667 fasta sequence [TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCTTTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGACTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTATAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAAAAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAAACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAGTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACATAAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAAAGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAAGAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGAAGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCC-AAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGGAAACTACACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC-ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG-AAAA-AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA] [+] EMBL CD096746 [TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCTTTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGACTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTATAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAAAAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAAACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAGTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAA ] [+] EMBL CD096773 [ GTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGGAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACATAAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAAAGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAAGAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGAAGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTAT ] [+] EMBL CD150002 [ ACATTTAGTAATGCAGAAGAAATTACTGAGGAACGTTTACCATTAATGTTATTATCTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATTTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCC AAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGG ] [+] EMBL CD152209 [ ACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCCAAAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGTAAACTACACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACATCTCCTTTTTTTTGAATACATTCAACTTAT ] [+] EMBL CD152179 [ CGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTA ] [-] EMBL CD095978 [ CATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGGAAAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTCTACGTTATATTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ] [-] EMBL CD095813 [ CATCTCCAATAACCGAGGATGACGAATCAGTCAAAACCACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ] [-] EMBL CD152199 [ CAGTCAAAACTACACCACAAGGTTTCGGGATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTAGACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ] [-] EMBL CD152230 [ CAAGAATGCGATATACAATTATACGTGATGAATTCTAACTAAGTATATACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTAATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ] [-] EMBL CD166130 [ GCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTCGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATA ] [-] EMBL CD152649 [ TTGAATACATTCAACTTATAGAAATGG AAAAGAAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA] [-] EMBL CD152717 [ TGGTGTGTGTACACATGGATGATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA] consensusID : consensus_10143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTTCTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCTTTTTTTATACTTTCAAACTGTGTTACTTTGTGTAGTGAAGTATTTTGTTCATCGATTTGACATAGTTCACTATGTATTGTACTCTATTACTGAAGAAATTTTGTAATTATATCATTTCTTTTCTAATTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT] [+] EMBL CD084126 [GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTTCTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCTTTTTTTATACTTTCAAACTGTGTTACTTTGTGTAGTGAAGTATTTTGTTCATCGATTTGACATAGTTCACTATGTATTGTACTCTATTACTGAAGAAATTTTGTAATTATATCATTTCTTTTCTAATTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10143#0 TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCT 60 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGA 120 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 CTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTA 180 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAA 240 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAA 300 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 ACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAG 360 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAA 420 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTG 480 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTC 540 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACAT 600 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAA 660 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAA 720 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGA 780 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCG 840 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 TTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAAC 900 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 AGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCT 960 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 ACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGAT 1020 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GGCATTAAGTGATCCAAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGGAAACTA 1080 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 CACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAG 1140 consensus_10143#1 ------------------------------------------------------------ consensus_10143#0 GATGACGAATCAGTCAAAACTACACCACATGTTTCTGTATTCCAACATTTAAGCCCATCA 1200 consensus_10143#1 ------------GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCA 48 * ** * * *** * *** ** * ** * **** consensus_10143#0 AGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATAT 1260 consensus_10143#1 TCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTA-AATTAAACAGTGATTG 107 * * ** * * * * * * * * * * ** ** * ** ** consensus_10143#0 ACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATAC 1320 consensus_10143#1 TTCTGTTTTCCTTT-TCTTTTCTTTCTGTTGTTGTA-CAT-TTTCCTTCTACACGAATGT 164 * * ** ** * * ** **** * ** ** * ***** * **** consensus_10143#0 ATTCAACTTATAGAAATGGAAAAAAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACT 1380 consensus_10143#1 G---AATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTT 221 ** * * ** **** * ** * * * * * ** * * * * consensus_10143#0 ATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTA 1440 consensus_10143#1 -CTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCT-TTTTTTATACTTTCAA 279 * *** * ** * *** * ** **** * *** **** *** * * * consensus_10143#0 ATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATG 1500 consensus_10143#1 ACTGTGTTACTTTGTGTA-GTGAAGTATT-TTGTTCATCGATTTGACATAGTTCACTATG 337 * ***** ** *** * * ** *** * * ** * * *** consensus_10143#0 GATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAA 1560 consensus_10143#1 TATTGTA-CTCTATTACTGAAGAA--ATTTTGTAATTA--TATCATTTCTTT---TCTAA 389 ** ** * ** * * *** * **** ** **** **** * ** consensus_10143#0 CAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACAC 1620 consensus_10143#1 TTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT---------- 439 * *** ** * ** **** * * * ** ** * * * consensus_10143#0 GAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA 1667 consensus_10143#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||