These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 678 fasta sequence [TGTCATGGTGGGAGGTAAACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC-GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA-TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT-TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC-TTTCTCCGTATAAG-AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA-ACAATAACATAAAATTTATCATGG-TGTGAATATACAGTGCAGGATGTAAGATG-AAAGTAATTA-GGGAA-TAAATGCAGCATACAATGCTTACAGTATC-GGATTAT-GGCTCTAAGATGATCA-TTTCGACTACCGCG-CCT-AA-GTT-GGATTTAGATACAGTCCAGGAC] [-] EMBL CD082280 [TGTCATGGTGGNAGGTAAACGTAAGACNTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATAGAATGCTTACAGTATC GAATTAT GGCTCTAAGATGATCA TTTCGACTACCagtcct ] [+] EMBL CD192378 [ CATGGTGGGAGGTAAACGTAAGGCCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTG ] [+] EMBL CD192073 [ CATGGTGGGAGGTAAACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCT ] [+] EMBL CD132999 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCGCAGACATTTCCAAAATATTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCANGATGTAAGATG AAAGTAATTC GGGAA TAAATGCAGCATAAAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGATnt ] [+] EMBL CD189300 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCANAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATGAAAAGT ATTA NGGAA TAAATGCAGCATANAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AN GNT GGnatn ] [+] EMBL CD183582 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATAACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCANAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTCTTTTCT CGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTNG ACANTAACAT AAATTTATCATGGNGGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAATTAAATGCAGCATACCATGCTTACAGTATCGGGATTAT GCCTCTAAGATGATCA TTTCGACTACCGC ] [+] EMBL CD188456 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTCTGAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGC CCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCANGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCGCCCT AA GTT GGACTTAGATACAGTCCAGGAC] [+] EMBL CD190179 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTTNTTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAGAAGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACANTAACATANAATNTATCATGGNTGTGAATATACAGTGCAGGATGTANGATG AAAGT ATTANGGGAA T AATGCAGCATACCATGCTTACAGTATC GGATTATGGGCTCT AGATGATCA TTTCGACTACCGCG CCTNAG GTTNGNATTT ] [-] EMBL CD133473 [ ACGTAAGACGTAAATAATCTGGCGACCCACATAAAGTACTGTTGTCAATTCAGACTTT GTCTTC GAAAAGTTTTTGTGGGACTTCATCTCCTTGAA TATAGTCTTGTGCATCAATCACAGAAAGAATTTCTATCGCTCCTGTCTCATGTACTTCACCAGCTAGTAAATATTCATCCTAAACAAAATAAGCTTTTTCAGAGTGAAAGATTATGTCCAATTCACAGACATTTCCAGAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTC GGGAA TAAATGCAGCATAAAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGATTT ] [+] EMBL CD190038 [ TAAAGTACTGTTGCCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAGACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGANAC ATAACATAAAATNTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGT ATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGGATAT GGCTCTAAGATGATCATTTTCGACTACCGCGCCCT AG GTT GGGATTAGATACAGTACA ] [-] EMBL CD189992 [ AAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGATTAT GGCTTTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGAT ] consensusID : consensus_10144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAAACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCCAATTGAAACTTTGGTCTTCAAAAAGTTTTTGGGGGACTTCATCCTTTTGAATTATATTTTGGGCATCAATCACAAAAAAAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAAAATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT] [+] EMBL CD075885 [AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAAACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCCAATTGAAACTTTGGTCTTCAAAAAGTTTTTGGGGGACTTCATCCTTTTGAATTATATTTTGGGCATCAATCACAAAAAAAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAAAATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT] consensusID : consensus_10144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTCGAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAAGAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGC] [-] EMBL AA559694 [AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTCGAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAAGAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10144#0 -----------------------------------TGTCATGGTGGGAGGTAAACGTAAG 25 consensus_10144#2 ------------------------------------------------------------ consensus_10144#1 AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAA 60 consensus_10144#0 ACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTC-AATTGAGACTTTGGTCTT-C 83 consensus_10144#2 --------------------------AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTC 34 consensus_10144#1 ACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCC-AATTGAAACTTTGGTCTT-C 118 **** ****** * ****** *********** * consensus_10144#0 GAAAAGTTTTTGTGGGACTTCATCCT-CTTGAATTATATCTTGTGCATCAATCACAGAAA 142 consensus_10144#2 GAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAA 94 consensus_10144#1 AAAAAGTTTTTGGGGGACTTCATCCT-TTTGAATTATATTTTGGGCATCAATCACAAAAA 177 ******* * ************* * ******* *** ** ******** ** consensus_10144#0 GAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAA 202 consensus_10144#2 GAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCA 154 consensus_10144#1 AAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAA 237 ***** ********* **** * ** ******* * ****** * *** *** **** * consensus_10144#0 AATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTAT 262 consensus_10144#2 AATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTAT 214 consensus_10144#1 AATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTAT 297 ***************** **** *** ************* ** ********** ***** consensus_10144#0 CCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGAT 322 consensus_10144#2 CCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGAT 274 consensus_10144#1 CCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT--- 354 *** **************** ************************************ consensus_10144#0 CAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCC 382 consensus_10144#2 CAATAGC----------------------------------------------------- 281 consensus_10144#1 ------------------------------------------------------------ consensus_10144#0 ATTCTAGAAACGAGCACATTTTTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTA 442 consensus_10144#2 ------------------------------------------------------------ consensus_10144#1 ------------------------------------------------------------ consensus_10144#0 AATACTTTTTCTTTTCTTTCTCCGTATAAGAGCTATACCATTTTTGAAGTCGCACTTTAC 502 consensus_10144#2 ------------------------------------------------------------ consensus_10144#1 ------------------------------------------------------------ consensus_10144#0 CTTGACGACTGAACAATAACATAAAATTTATCATGGTGTGAATATACAGTGCAGGATGTA 562 consensus_10144#2 ------------------------------------------------------------ consensus_10144#1 ------------------------------------------------------------ consensus_10144#0 AGATGAAAGTAATTAGGGAATAAATGCAGCATACAATGCTTACAGTATCGGATTATGGCT 622 consensus_10144#2 ------------------------------------------------------------ consensus_10144#1 ------------------------------------------------------------ consensus_10144#0 CTAAGATGATCATTTCGACTACCGCGCCTAAGTTGGATTTAGATACAGTCCAGGAC 678 consensus_10144#2 -------------------------------------------------------- consensus_10144#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||