These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1473 fasta sequence [GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTCATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG--TTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT-TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATGTAAACGCACGGTTTGACCACCCACTCTCG] [-] EMBL CD145137 [GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTCATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCCACTACGACTTCTTTCACGGTGAGGTCCATGATG ] [+] EMBL CD197277 [ GAAAACGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCG ] [+] EMBL CD197334 [ GAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCCTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATAAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGT ] [+] EMBL CD154188 [ GACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGAGGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCANATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGNTTCACCCTTCGAGTGNNTTCG NTNTTTTCACATGNTCGCGC ] [+] EMBL CD153207 [ ACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCANATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTNTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTCTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGC ] [+] EMBL CD130002 [ ATATCGCTTGGACTTTGAAGGCGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGG ] [+] EMBL CD062924 [ AACTGTCCCCGCTAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG TTT ] [-] EMBL CD062857 [ ACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACATTTACCTCAGAGTTCGCTTCATCGTGTTTGATACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG TTTT ] [-] EMBL CD153038 [ TGTCNCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACA TTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTNTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAG ] [+] EMBL CD113654 [ AACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACATATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACCAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAGGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATGTAAACGCACGGTTTGAC ] [-] EMBL CD139362 [ CGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCCTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCC ] [-] EMBL CD121482 [ TTGATCTGCACTATGTCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTTGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGG ] [+] EMBL CD138305 [ AAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTANAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATNNGTACGCACGGTTGAAACACCCACTCTCG] consensusID : consensus_10168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 96 fasta sequence [TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGGCGATCTACTGTTTTGCTCAACTTGGNGATAAATGATGACG] [+] EMBL CD157593 [TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGGCGATCTACTGTTTTGCTCAACTTGGNGATAAATGATGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10168#0 GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTC 60 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTC 120 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACG 180 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 TTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATA 240 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 TCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCG 300 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTG 360 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 AGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGA 420 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 TTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACT 480 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 GACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACC 540 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 GCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGG 600 consensus_10168#1 ----TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGG 56 ******************************************* ************ consensus_10168#0 CGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATG 660 consensus_10168#1 CGATCTACTGTTTTGCTCAACTTGGNG-----ATAAATGATGACG--------------- 96 ******************* * *** * ** * * consensus_10168#0 GGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACG 720 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 CGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGT 780 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCG 840 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ACAACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGA 900 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 CATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGAT 960 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 AACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATG 1020 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 CCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAA 1080 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 GTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTATTCGACTGACTAACATCCGAAG 1140 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCA 1200 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 GAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGG 1260 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 ACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTT 1320 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 TACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCA 1380 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 TTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACA 1440 consensus_10168#1 ------------------------------------------------------------ consensus_10168#0 CATGTAAACGCACGGTTTGACCACCCACTCTCG 1473 consensus_10168#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||