These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CCGCGCCGGTCTGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAAAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGGCAACGATCGATGCTATTGTGGCTAGTGTATTGCCGAAAGAAACGGTATAAATGTAAAGTTTAACGTCCAACGTTTGTTAGATTTGGATCCAGCCTAAAGGTACCTTCTATGCTGGGAGAGTGTGGAGAACCGTATGTGGATCTGGGAAATAATACAACCGAAGAAAAAAGGGGCCGAAAACTCAGTAAGCATATAGAATGTGCATACGTTAAATAATGAGAACAATCGACACCAATAAGAATTAAAACTTCGTTTTTAAGAAACCTGGTAATCGAAACTGAGAGTTGGGGTACTTTCCATATCCCGTCCGC] [+] EMBL CD200805 [CCGCGCCGGTCTGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAAAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGGCAACGATCGATGCTATTGTGGCTAGTGTATTGCCGAAAGAAACGGTATAAATGTAAAGTTTAACGTCCAACGTTTGTTAGATTTGGATCCAGCCTAAAGGTACCTTCTATGCTGGGAGAGTGTGGAGAACCGTATGTGGATCTGGGAAATAATACAACCGAAGAAAAAAGGGGCCGAAAACTCAGTAAGCATATAGAATGTGCATACGTTAAATAATGAGAACAATCGACACCAATAAGAATTAAAACTTCGTTTTTAAGAAACCTGGTAATCGAAACTGAGAGTTGGGGTACTTTCCATATCCCGTCCGC] consensusID : consensus_10171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GCNCGCCCATATGCTCTCACGGGAATCGACTGAAGGGAGTATCTGGGAAGCATTAGCCTTCTCATCATTTTACAAACTGGATAATCTTGTTATAATATTCGACGGTAATCGCCTTGGACAAAGTCAGCCGACACAACTGCAACACCATTTAGAAGCTTATCGACTACGGACTGAAGCATTTGGGTGTCATTCTATAGTGGTAGATGGTCATAACATTGAGGAGTTACTTAAAGCATTTTCATGTGCTCGTACGGTCAAAAATAAACCTGTTGCTTTAATTTGTAAAACGTACAAAGGTCAAGATTTCCCTGGTATTGCTGATCAGGAGAATTGGCATGGTAAACCCCTTGGAGTTAAGGCGAAGGAAGTTTTGGATTACCTCAATGCTCAATTAAGCAATACTTCAGTTGGTAGTTATTCTCTACCT] [+] EMBL CD062664 [GCNCGCCCATATGCTCTCACGGGAATCGACTGAAGGGAGTATCTGGGAAGCATTAGCCTTCTCATCATTTTACAAACTGGATAATCTTGTTATAATATTCGACGGTAATCGCCTTGGACAAAGTCAGCCGACACAACTGCAACACCATTTAGAAGCTTATCGACTACGGACTGAAGCATTTGGGTGTCATTCTATAGTGGTAGATGGTCATAACATTGAGGAGTTACTTAAAGCATTTTCATGTGCTCGTACGGTCAAAAATAAACCTGTTGCTTTAATTTGTAAAACGTACAAAGGTCAAGATTTCCCTGGTATTGCTGATCAGGAGAATTGGCATGGTAAACCCCTTGGAGTTAAGGCGAAGGAAGTTTTGGATTACCTCAATGCTCAATTAAGCAATACTTCAGTTGGTAGTTATTCTCTACCT] consensusID : consensus_10171#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 418 fasta sequence [AGGGACGACATGGATTAGGACAGAGAAATGAAAATGGGGAGAGATTTGCACCTATAAAGAGTGTTGCTCTGGTTGTTAGAAGGTGCATCGGCCTCGTGAATTCCGAAGAATTTCGGCTTTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGAATTATTTTTTCTGGTTAGTGTTTTTTTAGCGAGTTAGTTTTTCTACAGGATGAGGTCGCTAACCTCATGCCCAATCCTCCTCCTTTACCCAGACTTGGAACCAGCAGTAATTCTAGAAGAGTTACGAGCGGAGTCACGCCCCCCTAAGTCTTAAAGAATATTGAATAACAATGAATTTCATCGTACAGAATCATTGGTTAACAATAACCACATACATTCATTAAATCTAACCTCGTCCCT] [+] EMBL CD124382 [AGGGACGACATGGATTAGGACAGAGAAGTGAAAATGGGGAGAGATTTGCACCTATAAAGAGTGTTGCTCTGGTTGTTAGAAGGTGCATCGGCCTCGTGAATTCCGAAGAATTTCGGCTTTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGAATTATTTTTTCTGGTTAGTGTTTTTTTAGCGAGTTAGTTTTTCTACAGGATGAGGTCGCTAACCTCATGCCCAATCCTCCTCCTTTACCCAGACTTGGAACCAGCAGTAATTCTAGAAGAGTTACGAGCGGAGTCACGCCCCCCTAAGTCTTAAAGAATATTGAATAACAATGAATTTCATCGTACAGAATCATTGGTTAACAATAACCACATACATTCATTAAATCTAACCTCGTCCC ] [+] EMBL CD124400 [AGGGACGACATGGATTATGACAGAGAAATGAAAATGGGGAGAGATTTGCACCTATAAATAGTGTTGCTCTGGTTGTTAGAAGGCGCATCGGCCTCGTGAATTCCGAAGAATTTCGGCTTTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGAATTATTTTTTCTGGTTAGTGTTTTTTTAGCGAGTTAGTTTTTCTACAGGATGAGGTCGCTAACCTCATGCCCAATCCTCCTCCTTTACCCAGACTTGGAACCAGCAGTAATTCTACAAGAGTTACGAGCGGAGTCACGCCCCCCTAAGTCTTAAAGAATATTGAATAACAATGAATTTCATCGTACAGAATCATTGGTTAACAATAACCACATACATTCATTAAATCTAACCTCGTCCC ] [-] EMBL CD124426 [ GGGACGACATGGATTAGGACAGAGAAATGAAAATGGGGAGAGATTTGCACCTATAAAGAGTGTTGCTCTGGTTGTTAGAAGGTGCATCGGCCTCGTGAATTCCGAAGAATTTCGGCTTTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGAATTATTTTTTCTGGTTAGTGTTTTTTTAGTGAGTTAGTTTTTCTACAGGATGAGGTCGCTAACCTCATGCCCAATCCTCCTCCTTTACCCAGACTTGGAACCAGCAGTAATTCTAGAAGAGTTACGAGCGGAGTCACGCCCCCCTAAGTCTTAAAGAATATTGAATAACAATGAATTTCATCGTACAGAATCATTGGTTAACAATAACCACATACATTCATTAAATCTAACCTCGTCCCT] [-] EMBL CD124410 [ GGGACGACATGGATTAGGACAGAGAAATGAAAATGGGGAGAGATTTGCACCTATAAAGAGTGTTGCTCTGGTTGTTAGAAGGTGCATCGGCCTCGTGAATTCCGAAGAATTTCGGCTTTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGAATTATTTTTTCTGGTTAGTGTTTTTTTAGTGAGTTAGTTTTTCTACAGGATGAGGTCGCTAACGTCATGCCCAATCCTCCTCCTTTACCCAGACTTGGAACCAGCAGT ] consensusID : consensus_10171#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TGTTACATGTGTATGTGGTTGATGGTGAGCGTTGTATTTGGTGTGATTGAGTATGTTATTATGTTTTGTAGGGTGTGCTATGTATTGGTGTTGCTGTTGTTGTTGTTGTTTAGACGAGTGACGTATGTGTATGAGATAAGTATAGATGTATGTATACATGTGTATATTTGATTATATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACGGGAGTGTAGATAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGCTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGTTGGTG] [+] EMBL CD085302 [TGTTACATGTGTATGTGGTTGATGGTGAGCGTTGTATTTGGTGTGATTGAGTATGTTATTATGTTTTGTAGGGTGTGCTATGTATTGGTGTTGCTGTTGTTGTTGTTGTTTAGACGAGTGACGTATGTGTATGAGATAAGTATAGATGTATGTATACATGTGTATATTTGATTATATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACGGGAGTGTAGATAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGCTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGTTGGTG] consensusID : consensus_10171#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 352 fasta sequence [AACTGGAAAGAAATAACAAGGACTGCCCAGGACAGGGTCGAATGGAGAATGCTGGTGGGCGGCCTATGCTCCACCACGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGGCAACGATCGATGCTATTGTGGCTAGTGTATTGCCGAAAGAAACGGTATAAATGTAAAGTTTAACGTCCAACGTTTGTTA] [+] EMBL CD184159 [AACTGGAAAGAAATAACAAGGACTGCCCAGGACAGGGTCGAATGGAGAATGCTGGTGGGCGGCCTATGCTCCACCACGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGGCAACGATCGATGCTATTGTGGCTAGTGTATTGCCGAAAGAAACGGTATAAATGTAAAGTTTAACGTCCAACGTTTGTTA] [+] EMBL CD113036 [ GGAGAATGCTGGTGGGCGGCCTATGCTCCACCACGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGG ] [+] EMBL CD113080 [ GGAGAATGCTGGTGGGCGGCCTATGCTCCACCACGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGG ] [+] EMBL CD113123 [ GGAGAATGCTGGTGGGCGGCCTATGCTCCACCACGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGG ] [+] EMBL CD180613 [ TAGAAGTTGTGGAAAGATGTCTAGTATTTTATCTATATGGTGTGTAAAACCCGCATACATTTTCGTTCGTTCGAGAGCGGGAAGTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTTTTAGCCTACAACGAGAGCTCTGTTCGAACAAGATGGCAACGATCGATGCTATTGTGGCTAGTGTATTGCCGAAAGAAACGGTATAAATGTA ] consensusID : consensus_10171#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 226 fasta sequence [TACGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAAAAACAAGGCCAAAAAGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAA] [+] EMBL CD185106 [TACGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAAAAACAAGGCCAAAAAGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAA] [+] EMBL CD185429 [TACGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAAAAACAAGGCCAAAAAGATTCTCTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTCATGCTAGGAATAAACTAGTGACAGTTCCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10171#0 ------------------------------------------------------------ consensus_10171#4 AACTGGAAAGAAATAACAAGGACTGCCCAGGACAGGGTCGAATGGAGAATGCTGGTGGGC 60 consensus_10171#3 ------------------------------------------------------------ consensus_10171#5 ------------------------------------------------------------ consensus_10171#1 ----------------------------------------------------GCNCGCCC 8 consensus_10171#2 ------------------------------------------------------------ consensus_10171#0 --------CCGCGCCGGTCTGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAAAAGT 52 consensus_10171#4 GGCCTATGCTCCACCA-CGAGGGGTAACAGGCGTAAGTTGGGACTAAAGGGTTTAGAAGT 119 consensus_10171#3 ------TGTTACATGTGTATGTGGTTGATGGTGAGCGTTGTATTTGGTGTGATTGAGTAT 54 consensus_10171#5 ---------------------------------------------TACGATTCTCTGGAT 15 consensus_10171#1 ATATGCTCTCACGGGAATCGACTGAAGGGAGTATCTGGGAAGCATTAGCCTTCTCATCAT 68 consensus_10171#2 -AGGGACGACATGGATTAGGACAGAGAAATGAAAATGGGGAGAGATTTGCACCTATAAAG 59 * consensus_10171#0 TGTGGAAAGATGTCTAGTATTTTAT-CTATATGGTGTGTAAAACCCGCATACATTTTCGT 111 consensus_10171#4 TGTGGAAAGATGTCTAGTATTTTAT-CTATATGGTGTGTAAAACCCGCATACATTTTCGT 178 consensus_10171#3 GTTATTATGTTTTGTAGGGTGTGCT-ATGTATTG-GTGTTG---CTGTTGTTGTTGTTGT 109 consensus_10171#5 CATGCCAAGAAGTTCGAAATGAAATACCGTCTTGCTAGGAA----TAAACTAGTGACAGT 71 consensus_10171#1 TTTACAAACTGGATAATCTTGTTATAATATTCGACGGTAATCGCCTTGGACAAAGTCAGC 128 consensus_10171#2 AGTGTTGCTCTGGTTGTTAGAAGGT-GCATCGGCCTCGTGAATTCCGAAGAATTTCGGCT 118 * * * consensus_10171#0 TCGTTCGAGAGCGGGAA-GTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTT 170 consensus_10171#4 TCGTTCGAGAGCGGGAA-GTCTGTTGACCGATTTAAGATGCTTTCATACAGCTGAATGTT 237 consensus_10171#3 TTAGACGAGTGACGTAT-GTGTATGAGATAAGTATAGATGTATGTATACATGTGTATATT 168 consensus_10171#5 TCCACCGAAAGGAAGAA-AGTTAAGGAAAGA--AAGGAAAAACAAGGCCAAAAAGATTCT 128 consensus_10171#1 CGACACAACTGCAACACCATTTAGAAGCTTATCGACTACGGACTGAAGCATTTGGGTGTC 188 consensus_10171#2 TTCCTCATGAGGCATCATAATTCTTCCTTTAACTCCCAGAGCACAGTTTAAATAGTTTGA 178 * * * * * * * consensus_10171#0 TTAGCCTACAACGAGAGCTC--TGTTCGAACAAGATGGCAACGATCGATGCTATTGTG-G 227 consensus_10171#4 TTAGCCTACAACGAGAGCTC--TGTTCGAACAAGATGGCAACGATCGATGCTATTGTG-G 294 consensus_10171#3 TGATTATATGTGAATAAATAAACATTTGTTTATCATC-TGCCTGTCTGTCTGTTTATA-A 226 consensus_10171#5 CTGGATCATGCCAAGAAGTTCGAAATGAAATACCGTC-TTGCTAGGAATAAACTAGTG-A 186 consensus_10171#1 --ATTCTATAGTGGTAGATGGTCATAACATTGAGGAG-TTACTTAAAGCATTTTCATGTG 245 consensus_10171#2 ATTATTTTTTCTGGTTAGTG-TTTTTTTAGCGAGTTAGTTTTTCTACAGGATGAGGTC-G 236 * * consensus_10171#0 CTAGTGTATTGCCGAAAGAAACG-GTATAAATGTAAAGTTTAACGTCCAACGTTTGTTAG 286 consensus_10171#4 CTAGTGTATTGCCGAAAGAAACG-GTATAAATGTAAAGTTTAACGTCCAACGTTTGTTA- 352 consensus_10171#3 TTAGCG--GTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACGGGAGTGTAGAT 284 consensus_10171#5 C-AGTT--CCACCGAAAGGAAGAAAGTTAAGGAAAGAAAGGAA----------------- 226 consensus_10171#1 CTCGTACGGT-CAAAAATAAACCTGTTGCTTTAATTTGTAAAACGTACAAAGGTCAAGAT 304 consensus_10171#2 CTAACCTCATGCCCAATCCTCCTCCTTTACCCAGACT-TGGAACCAGCAGTAATTCTAGA 295 * * consensus_10171#0 ATT--TGGATCCAGCCTAAAGGTACCTTCTATGCTGGGAGAGTGTGGAGAACCGTATGTG 344 consensus_10171#4 ------------------------------------------------------------ consensus_10171#3 AGA--TGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGCTGATCTAGCATAAGT 342 consensus_10171#5 ------------------------------------------------------------ consensus_10171#1 TTCCCTGGTATTGCTGATCAGGAGAATTGGCATGGTAAACCCCTTGGAGTTAAGGCGAAG 364 consensus_10171#2 AGAGTTACGAGCGGAG-TCACGCCCCCCTAAGTCTTAAAGAATATTGAATAACAATGAAT 354 consensus_10171#0 GATCTGGGAAATAATA-CAACCGAAGAAAAAAGGGGCCGAAAACTCAGTAAGCATATAGA 403 consensus_10171#4 ------------------------------------------------------------ consensus_10171#3 TATGTAGTGAATGTGT-TTGTTGGTG---------------------------------- 367 consensus_10171#5 ------------------------------------------------------------ consensus_10171#1 GAAGTTTTGGATTACC-TCAATGCTCAATTAAGCAATACTTCAGTTGGTAGTTATTCTCT 423 consensus_10171#2 TTCATCGTACAGAATCATTGGTTAACAATAACCACATACATTCATTAAATCTAACCTCGT 414 consensus_10171#0 ATGTGCATACGTTAAATAATGAGAACAATCGACACCAATAAGAATTAAAACTTCGTTTTT 463 consensus_10171#4 ------------------------------------------------------------ consensus_10171#3 ------------------------------------------------------------ consensus_10171#5 ------------------------------------------------------------ consensus_10171#1 ACCT-------------------------------------------------------- 427 consensus_10171#2 CCCT-------------------------------------------------------- 418 consensus_10171#0 AAGAAACCTGGTAATCGAAACTGAGAGTTGGGGTACTTTCCATATCCCGTCCGC 517 consensus_10171#4 ------------------------------------------------------ consensus_10171#3 ------------------------------------------------------ consensus_10171#5 ------------------------------------------------------ consensus_10171#1 ------------------------------------------------------ consensus_10171#2 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||