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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1669 fasta sequence
[ACCTACGGACCTGTGAATACTAGTTTTGACGTTGATGGCAATTCAAATCCAACTGAAAATTCTACTTCTGATTCATTTCCACCTTTCTTCGAGGGAACTTATGCCGATGCTGTTCAAGAAGCTAAACAAAGTTTACGATTTCTGATTGTTTATTTACATGGAGATTCACATGAAGATACCCATCGGTTTTGCAAGGATATTCTTCAATCGGAAGACGTTTTACGGTTTCTTAGAAATTCCAATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGAACTCTTCGAGAGCATACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATTTCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAAGGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATACTGAATGAACATCAAACAGCTATAATAACAGCTCGATTAGACCGGAGTGAACGAGAAATGAATGCTCAATTGAGGCGTGAGCAAGACTTAGCTTATGAGGCATCACTTGCTGAGGATCGAGCTAAAATGGCTGCTCGAGAGGCACAGCAACGAAGTGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAACGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGATTCACCAACAGAATTCGAAGTGCAATCCAATTTTCCTAAACGTATTATACCATGTCAACCATTTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGATAATAAGATGGATTGCGATGAGCCTGAAGTGATTACAGATTGGTCTCCTAAATGTCAGAATGATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAACAAGGATGCATGATATTATGGAGTTTTGAGCTTCCTACCCTTCCAACACCAATGTAGCTATTTCTTTATGGATAAAGCTATTCCATTGTTAAATAGGTCCATGTATTATGTTTTTGGTGTAGTATTCTGTCCTCCAAATAAGTACGGATAATAATAATAGTAATAATATAATAAATGACTTGAGGAGTCATTTTCTTATACAGTTGTTCTAATGTATTTTTCTCCGATTATTTTATTCATACTCGTATCATTTTCTTACTCTGGTCTCACATACAATATTACACTTATTTTGCTTGTATTAATTCCCATTGGCATATAACATTCCTTATACACATGTGGTTTCTCATGAAAACAGACTCCTAACTGTTAACCTGTTTATCTACTTCAATATTTTTGTGAACTGTTTTGAGGTAATATTGAAGTTCACTTTCAGACACTATGTGATCAATTGTATGAAAAGTCTTTCCCCTTGTTTTTCAGATATGCACACGGGTTTCGTGCAAATTAGTTCAACTAACACTGTTTTTATTACTACAATAATGATAATCACTTGTATTTTATTTGTGTACAGTACAAGCATTGAACTGCTT]
[+] EMBL CD112003 [ACCTACGGACCTGTGAATACTAGTTTTGACGTTGATGGCAATTCAAATCCAACTGAAAATTCTACTTCTGATTCATTTCCACCTTTCTTCGAGGGAACTTATGCCGATGCTGTTCAAGAAGCTAAACAAAGTTTACGATTTCTGATTGTTTATTTACATGGAGATTCACATGAAGATACCCATCGGTTTTGCAAGGATATTCTTCAATCGGAAGACGTTTTACGGTTTCTTAGAAATTCCAATGAATTATTATTTTGGGGTTGTAATATTG ]
[+] EMBL CD111989 [ACCTACGGACCTGTGAATACTAGTTTTGACGTTGATGGCAATTCAAATCCAACTGAAAATTCTACTTCTGATTCATTTCCACCTTTCTTCGAGGGAACTTATGCCGATGCTGTTCAAGAAGCTAAACAAAGTTTACGATTTCTGATTGTTTATTTACATGGAGATTCACATGAAGATACCCATCGGTTTTGCAAGGATAT ]
[-] EMBL CD186681 [ TTCCACCTTTCTTCGAGGGAACTTATGCCGATGCTGTTCAAGAAGCTAAACAAAGTTTACGATTTCTGATTGTTNATTTACATGGAGATTCACATGAAGATACCCATCGGTTTTGCAAGGATATTCTTCAATCGGAAGACGTTTTACGGTTTCTTAGAAATTCCAATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGAACTCTTCGAGAGCATACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATTTCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAAGGTGTAT ]
[+] EMBL CD128088 [ ACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAAGGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATACTGAATGAACATCAAACAGCTATAATAACAGCTCGATTAGACCGGAGTGAACGAGAAATGAATGCTCAATTGAGGCGTGAGCAAGACTTAGCTTATGAGGCATCACTTGCTGAGGATCGAGCTAAAATGGCTGCTCGAGAGGCACAGCAACGAAGTGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAACGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTC ]
[+] EMBL CD178357 [ ATCATCAGAACTTGTTAATCAGTTGAATAGTATACTGAATGAACATCAAACAGCTATAATAACAGCTCGATTAGACCGGAGTGAACGAGAAATGAATGCTCAATTGAGGCGTGAGCAAGACTTAGCTTATGAGGCATCACTTGCTGAGGATCGAGCTAAAATGGCTGCTCGAGAGGCACAGCAACGAAGTGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAACGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGATTCACCAACAGAATTCGAAGTGCAATCCAATTTTCCTAAACGTATTATACCATGTCAACCATNTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGATAATA ]
[+] EMBL CD077869 [ CATCACTTGCTGAGGATCGAGCTAAAATGGCTGCTCGAGAGGCACAGCAACGAAGGGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAACGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGATTCA ]
[-] EMBL BG930424 [ TCGAGCTAAAATGGCTGCTCGAGAGGCACAGCAACGAAGTGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAACGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGAT ]
[-] EMBL BG930253 [ TCTACAAAAAGCTCACA TCGTCGCAAGCGTATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCT GCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGAT ]
[-] EMBL CD179025 [ ATATGGAAAAATAGGTTACCACCACCACCTAAGTTTGAAGAGGGATCTACGGTAAAGTTGTCATTCAAAATGCCACATGGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTCATATTATCTCAGGATGATTCACCAACAGAATTCGAAGTGCAATCCAATTTTCCTAAACGTATTATACCATGTCAACCATTTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGATAATAAGATGGATTGCGATGAGCCTGAAGTGATTACAGATTGGTCTCCTAAATGTCAGAATGATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAACAAGGATGCATGATATTATGGAGTTTTGA ]
[-] EMBL CD180873 [ TTCCTAAACGTATTATACCATGTCAACCATTTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGATAATAAGATGGATTGCGATGAGCCTGAAGTGATTACAGATTGGTCTCCTAAATGTCAGAATGATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAACAAGGATGCATGATATTATGGAGTTTTGAGCTTCCTACCCTTCCAACACCAATGTAGCTATTTCTTTATGGATAAAGCTATTCCATTGTTAAATAGGTCCATGTATTATGTTTTTGGTGTAGTATTCTGTCCTCCAAATAAGTACGGATAATAATAATAGTAATAATATAATAAATGACTTGAGGAGTCATTTTCTTATACAGTTATTCTAATGTATTTTTCTCCGATTATTTTATTCATACTCGTATCAT ]
[+] EMBL CD078585 [ CCTAAACGTATTATACCATGTCAACCATTTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGATAATAAGATGGATTGCGATGAGCCTGAAGTGATTACAGATTGGTCTCCTAAATGTCAGAATGATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAACAAGGATGCATGATATTATGGAGTTTTGAGCTTCCTACCCTTCCAACACCAATGTAGCTATTTCTTTATGGATAAAGCTATTCCATTGTTAAATAGGTCCATGTATTATGTTTTTGGTGTAGTATTCTGTCCTCCAAATAAGTACGGATAATAATAATAGTAATAATATAATAAATGACTTGAGGAGTCATTTTCTTATACAGTTGTTCTAATGTATTTTTCTCCGATTATTTTATTCATACTCGTATCATTTTCTTACTCTGGTCTCACATACAATATTACACTTATTTTGCTTGTATTAATTCCCATTGGCATATAACATTCCTTATACACATGTGGTTTCTCATGAAAACAGACTCCTAACTGTTAACCTGTTTATCTACTTCAATATTTTTGTGAACTGTTTTGAGGTAATATTGA ]
[-] EMBL CD145364 [ TCNTAAATGTCAGAATGATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAACAAGGATGCATGATATTATGGAGTTTTGAGCTTCCTACCCTTCCAACACCAATGTAGCTATTTCTTTATGGATAAAGCTATTCCATTGTTAAATAGGTCCATGTATTATGTTTTTGGTGTAGTATTCTGTCCTCCAAATAAGTACGGATAATAATAATAGTAATAATATAATAAATGACTTGAGGAGTCATTTTCTTATACAGTTGTTCTAATGTATTTTTCTCCGATTATTTTATTCATACTCGTATCATTTTCTTACTCTGGTCTCACATACAATATTACACTTATTTTGCTTGTATTAATTCCCATTGGCATATAACATTCCTTATACACATGTGGTTTCTCATGAAAACAGTCTCCTAACTGTTAACCTGTTTATCTACTTCAATATTTTTGTGAACTGTTTTGAGGTAATATTGAAGTTCACTTTCAGACACTATGTGATCAATT ]
[-] EMBL CD076867 [ CAAAATAGTATCATTTTCTTACTCTGGTCTCACATACAATATTACACTTATTTTGCTTGTATTAATTCCCATTGGCATATAACATTCCTTATACACATGTGGTTTCTCATGAAAACAGACTCCTAACTGTTAACCTGTTTATGTACTTCAATATTTTTGTGAACTGTTTTGAGGTAATATTGAAGTTCACTTTCAGACCCTATGTGATCAATTGTATGAAAAGTCTTTCCCCTTGTTTTTCAGATATGCACACGGGTTTCGTGCAAATTAGTTCAACTAACACTGTTTTTATTACTACAATAATGATAATCACTTGTATTTTATTTGTGTACAGTACAAGCATTGAACTGCTT]
consensusID : consensus_10241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[CTACTCCAGACAGTGACGACGTTTTACGGTTTCTTAGAAATTCCAATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGAACTCTTCGAGAGCACACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATTTCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAAGGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATAC]
[+] EMBL CD166191 [CTACTCCAGACAGTGACGACGTTTTACGGTTTCTTAGAAATTCCAATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGAACTCTTCGAGAGCACACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATTTCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAAGGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10241#0 ACCTACGGACCTGTGAATACTAGTTTTGACGTTGATGGCAATTCAAATCCAACTGAAAAT 60
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 TCTACTTCTGATTCATTTCCACCTTTCTTCGAGGGAACTTATGCCGATGCTGTTCAAGAA 120
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GCTAAACAAAGTTTACGATTTCTGATTGTTTATTTACATGGAGATTCACATGAAGATACC 180
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CATCGGTTTTGCAAGGATATTCTTCAATCGGAAGACGTTTTACGGTTTCTTAGAAATTCC 240
consensus_10241#1 ----------------CTACTCCAGACAGTGACGACGTTTTACGGTTTCTTAGAAATTCC 44
** ** * ** ***************************
consensus_10241#0 AATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGA 300
consensus_10241#1 AATGAATTATTATTTTGGGGTTGTAATATTGAGTCTCCTGAAGGTTATCGTGTATCACGA 104
************************************************************
consensus_10241#0 ACTCTTCGAGAGCATACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATT 360
consensus_10241#1 ACTCTTCGAGAGCACACATATCCGTTCATTGGAGTCATTGGCTTGACTAATATGCCAATT 164
************** *********************************************
consensus_10241#0 TCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAA 420
consensus_10241#1 TCGGAAAGTGGAATCTATACCGGAAGTAGTACACGAATGGCGTTACTAGGGCGCATAGAA 224
************************************************************
consensus_10241#0 GGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATACTGAATGAACATCAA 480
consensus_10241#1 GGTGTATTAGAATCATCAGAACTTGTTAATCAGTTGAATAGTATAC-------------- 270
**********************************************
consensus_10241#0 ACAGCTATAATAACAGCTCGATTAGACCGGAGTGAACGAGAAATGAATGCTCAATTGAGG 540
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CGTGAGCAAGACTTAGCTTATGAGGCATCACTTGCTGAGGATCGAGCTAAAATGGCTGCT 600
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CGAGAGGCACAGCAACGAAGTGCTGCTTTAGAAGCGGAACAGCTAGCCAAAGATGCAAAA 660
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CGAAAGGAGGATCTACAAAAAGCTCACATTAATCGCAAGCGTATATGGAAAAATAGGTTA 720
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CCACCACCACCTAAGTTTGAAGAGGGATCTACGGTACAGTTGTCATTCAAAATGCCACAT 780
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GGTTCCAGAGTTTCTCGCGTCTTCAACTTAAACGATTCTATCAAGCTGCTCTACTATTTC 840
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 ATATTATCTCAGGATGATTCACCAACAGAATTCGAAGTGCAATCCAATTTTCCTAAACGT 900
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 ATTATACCATGTCAACCATTTGAAGAATCTGATGTGGAAGACTACGTAAATACTCCTGAT 960
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 AATAAGATGGATTGCGATGAGCCTGAAGTGATTACAGATTGGTCTCCTAAATGTCAGAAT 1020
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GATCCACCATCATTTTTTGATATTGATTTGACAAGACCAGAAATGTTGTTTGTTCTCAAC 1080
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 AAGGATGCATGATATTATGGAGTTTTGAGCTTCCTACCCTTCCAACACCAATGTAGCTAT 1140
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 TTCTTTATGGATAAAGCTATTCCATTGTTAAATAGGTCCATGTATTATGTTTTTGGTGTA 1200
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GTATTCTGTCCTCCAAATAAGTACGGATAATAATAATAGTAATAATATAATAAATGACTT 1260
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GAGGAGTCATTTTCTTATACAGTTGTTCTAATGTATTTTTCTCCGATTATTTTATTCATA 1320
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 CTCGTATCATTTTCTTACTCTGGTCTCACATACAATATTACACTTATTTTGCTTGTATTA 1380
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 ATTCCCATTGGCATATAACATTCCTTATACACATGTGGTTTCTCATGAAAACAGACTCCT 1440
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 AACTGTTAACCTGTTTATCTACTTCAATATTTTTGTGAACTGTTTTGAGGTAATATTGAA 1500
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GTTCACTTTCAGACACTATGTGATCAATTGTATGAAAAGTCTTTCCCCTTGTTTTTCAGA 1560
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 TATGCACACGGGTTTCGTGCAAATTAGTTCAACTAACACTGTTTTTATTACTACAATAAT 1620
consensus_10241#1 ------------------------------------------------------------
consensus_10241#0 GATAATCACTTGTATTTTATTTGTGTACAGTACAAGCATTGAACTGCTT 1669
consensus_10241#1 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||