These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 729 fasta sequence [TCCGAGGCCANAATTCGGCACGAGGACTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAGATTAACAACTGATGTCGTTTTTTTCTTCTTTGGTGTAAAAATATGAAACAGTTTTTTTTGTATTGTGATTAAA-TTACTCTTGAC-AAC-ACAT-A-AAACCANAACCTGTATACTGGCTGGNTACTNAATA--TGTNANATTTTGAAATTCAAAAAAAGTAAAAAAAACAAATT] [+] EMBL CD082437 [TCCGAGGCCANAATTCGGCACGAGGACTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAGATTAACAACTGATGTCGTTTTTTTCTTCTTTGGTGT AAAATATGAAACAGTTNTTTTTGTATTGTGATTAAANNTACTC TGACNNAC ACAT A AAACCANAACCTGTATACTGGCTGGNTACTNAATA TGTNAN ] [+] EMBL CD082198 [ acgAAACTAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATCTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAGATTAACAACTGATGTCGTTTTTTTCTTCTTTGGTGTAAAAATATGAAACAGTTTTTTTTGTATTGTGATTAAA TTACTCTTGAC AAC ACAT ANAAACCA AACCTGTATACTGCTTGGTTACT AAT ] [-] EMBL CD076036 [ GCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAGATTAACAACTGATGTCGTTTTTTTCTTCTTTGGTGTAAAAATATGAAACAGTTTTTTTTGTATTGTGATTAAA TTACTCTTGAC AACAACATAA AAACCAAAACCTGTATACT GCTTGGTAAATAATAATTGT A ATTTTGAAATTCAAAAAAAGTAAAAAAAACAAATT] [+] EMBL CD197237 [ AAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCCAATTCCAAGATTAACAACTGATGTTGTTTTTTTCTTCTTTGGTGTAAAAATATTAAACAGTTTTTTTTGGATTGTGATT ] [+] EMBL CD192040 [ CACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAG ] [+] EMBL CD192819 [ CACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAAAAAGTAACACTTATTGAGTTCACCACATTACACAGACTATCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTGCAGTATGATGTc ] [-] EMBL CD076132 [ ttAGTTCTCCACATTACACAGACTAGCCTTATTACATTTTTACCCAAAAATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAAATTGGAGCCAAATTCCAAGATTAAC ] consensusID : consensus_10243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence [AGACTTATTCGGCAACGTTGGTCACCAACTTGAGTTTGAGCGGTTGCTTTTATTGTCGTAAATCATCTAGTAACAACCTTTACAAATTAATAAGCTCACAAAGAAGCCGTGTTCAGGATGGATATGGATGTTCCAGAAGTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTNTTACACAAAGATAAAAGAACCAGGAATTCACTTCTTTCTTTCCAGTATGATGTTG] [+] EMBL CD082535 [AGACTTATTCGGCAACGTTGGTCACCAACTTGAGTTTGAGCGGTTGCTTTTATTGTCGTAAATCATCTAGTAACAACCTTTACAAATTAATAAGCTCACAAAGAAGCCGTGTTCAGGATGGATTTTCCTGCTCCAGAAGTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTNTTACACAAAGATAAAAGAACCAGGAATTCACTTCTTTCTTTCCAGTATGATGTTG] [+] EMBL BG931947 [ ATGGATGTTCCAGAAGTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGTCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGA ] [+] EMBL BG931946 [ ATGGATGTTCCAGAAGTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTGTTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCGCCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAAGCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGGAAAAGTAATGTTCGTAAAAGTACTGATTCTGATGAGAAAAAGAAACGGTTCCGAACTAGTGATTACAATCCTCTAATGGGTGATACTGGGAAAACTTACAGA ] consensusID : consensus_10243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 263 fasta sequence [TTACAGACGTGAAATGATTTCTTTTTAAAGATAGGGACAACTATTGACTCATACCATGATGTTGGAACACTCTTTAATTGTCGGTCCGTCGTGGTCCACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTC] [+] EMBL CD191978 [TTACAGACGTGAAATGATTTCTTTTTAAAGATAGGGACAACTATTGACTCATACCATGATGTTGGAACACTCTTTAATTGTCGGTCCGTCGTGGTCCACCAACTTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTC] [+] EMBL CD192638 [ TTCACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTC] [+] EMBL CD192745 [ CACGATTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATCAGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACACAAAGATAAAAGAACAAGGAATTCACTTCTTTC] consensusID : consensus_10243#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 97 fasta sequence [AATTACAATTATTAGTAACCAAGCAGTATACAGGGTTTTGGTTTTTATGTTGTTGTCAAGAGTAATTTAATCACAATACAAAAAAAACTGTTTCATA] [+] EMBL CD076131 [AATTACAATTATTAGTAACCAAGCAGTATACAGGGTTTTGGTTTTTATGTTGTTGTCAAGAGTAATTTAATCACAATACAAAAAAAACTGTTTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10243#1 AGACTTATTCGGCAACGTTGGTCACCAACTTGAGTTTGAGCGGTTGCTTTTATTGTCGTA 60 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 AATCATCTAGTAACAACCTTTACAAATTAATAAGCTCACAAAGAAGCCGTGTTCAGGATG 120 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 ----------------------------------------------------TCCGAGGC 8 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 GATATGGATGTTCCAGAAGTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTG 180 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 CANAATTCGGCACGAGGACTGAGTCCACAAACGAACTTCAATTATGGATTAGTGACTTTG 68 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 TTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCG 240 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 TTTATCATCGCATTATCATATTTTCTTTGGAAATTCTTCCGTTCTTGGTGCGAAAATTCG 128 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 TCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAA 300 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 TCGACTGTTAATAATGAATCACATCGCTTAGCTATGGAAGCTGCCAGAGCAAAATTTCAA 188 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 GCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGG 360 consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 GCTGAGTTCAATGCTGAGGTTACTCAGCACAAATCTAGAAATCAAGACGAGGGAGAAGGG 248 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 AAAAGTAATGTTCGTAAAAGTACTGATTCT----GATGAGAAAAAGAAACGGTTCCGAAC 416 consensus_10243#2 -----TTACAGACGTGAAATGATTTCTTTTTAAAGATAGGGACAACTATTGACTCATACC 55 consensus_10243#0 AAAAGTAATGTTCGTAAAAGTACTGATTCT----GATGAGAAAAAGAAACGGTTCCGAAC 304 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 TAGTGATTACAATCCTCT--AATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGA 474 consensus_10243#2 ATGATGTTGGAACACTCTTTAATTGTCGGTCCGTCGTGGTCC-----ACCAACTTCACGA 110 consensus_10243#0 TAGTGATTACAATCCTCT--AATGGGTGATACTGGGAAAACTTACAGACCAACTTCACGA 362 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 TTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATC 534 consensus_10243#2 TTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATC 170 consensus_10243#0 TTTTGTTCAACTGGTGGATGACGTTAAATACCCAACCAATTATAAGAATTCAATAAGATC 422 consensus_10243#3 -----------------------------AATTA--CAATTATTAGTAACCAAGCAGTAT 29 * * ******* ** * *** ** consensus_10243#1 AGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTNTTACA 594 consensus_10243#2 AGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACA 230 consensus_10243#0 AGAAAGTAACACTTATTGAGTTCACCACATTACACAGACTAGCCTTATTACATTTTTACA 482 consensus_10243#3 ACAGGGTTTTGGTTTTTATGTT------GTTGTCAAGAGTAATTTAATCACA-----ATA 78 * * ** ** ** *** ** *** ** * ** *** * * consensus_10243#1 CAAAGATAAAAGAACCAGGAATTCACTTCTTTCTTTCCAGTATGATGTTG---------- 644 consensus_10243#2 CAAAGATAAAAGAACAAGGAATTCACTTCTTTC--------------------------- 263 consensus_10243#0 CAAAGATAAAAGAACAAGGAATTCACTTCTTTCTTTCCAGTATGATGTTGTTAATTCGAA 542 consensus_10243#3 CAAAAAAAACTGTTTCATA----------------------------------------- 97 **** * ** * * consensus_10243#1 ------------------------------------------------------------ consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 ATTGGAGCCAAATTCCAAGATTAACAACTGATGTCGTTTTTTTCTTCTTTGGTGTAAAAA 602 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 TATGAAACAGTTTTTTTTGTATTGTGATTAAATTACTCTTGACAACACATAAAACCANAA 662 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#2 ------------------------------------------------------------ consensus_10243#0 CCTGTATACTGGCTGGNTACTNAATATGTNANATTTTGAAATTCAAAAAAAGTAAAAAAA 722 consensus_10243#3 ------------------------------------------------------------ consensus_10243#1 ------- consensus_10243#2 ------- consensus_10243#0 ACAAATT 729 consensus_10243#3 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||