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Schistosoma mansoni
cluster # 10259 cluster # 10259       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10259#0 length = 1143 sequences # 8  
consensus_10259#1 length = 913 sequences # 3  
consensus_10259#2 length = 568 sequences # 1  
consensus_10259#3 length = 415 sequences # 1  
consensus_10259#4 length = 331 sequences # 1  

consensusID : consensus_10259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1143
fasta sequence
                              [TCAGTTTTATACATGGTCTATGTGGTGCGCCCTTAACAAAAAAACAACTCAGATATTCATCTGTTAAGGATTGAGTTGAAGTGTGATATTTTCGACAGTGGTTCCAAAGTATAATCATAATAATAAGGTCTACACACATTCATCTAACGTCTTTTAATTTTTGGTCATGAGTAACATTTACGTTACCGAACCAGCAACTCATGGTAAAGTTATTCTAAAGACAACAGTCGGAGAAATAGAAATTGAGTTATGGTCCAAAGAAGCCCCTAAAGCATGCAGAAATTTTGTCCAACTGTGTATGGAGGGCTACTATGATGACACATCATTTCATCGGCTTGTTCGTGGTTTTATCGTTCAGGGCGGAGATCCGACAGGTACTGGAGAAGGTGGAGAAAGTATTTACGGACAACCTTTCAAGACGGAGATTCATTCAAGACTATCCTTCAATCGTCGTGGCCTTGTTGGGATGGCATGTCTTGAAGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCG-GCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAACAACCAACAGTTGAAAGAATACCCGTCGGGTGGAGCTGCAGATTG]

[-] EMBL CD147773             [TCAGTTTTATACATGGTCTATGTGGTGCGCCCTTAACAAAAAAACAACTCAGATATTCATCTGTTAAGGATTGAGTTGAAGTGTGATATTTTCGACAGTGGTTCCAAAGTATAATCATAATAATAAGGTCTACACACATTCATCTAACGTCTTTTAATTTTTGGTCATGAGTAACATTTACGTTACCGAACCAGCAACTCATGGTAAAGTTATTCTAAAGACAACAGTCGGAGAAATAGAAATTGAGTTATGGTCCAAAGAAGCCCCTAAAGCATGCAGAAATTTTGTCCAACTGTGTATGGAGGGCTACTATGATGACACATCATTTCATCGGCTTGTTCGTGGTTTTATCGTTCAGGGCGGAGATCCGACAGGTACTGGAGAAGGTGGAGAAAGTATTTACGGACAACCTTTCAAGACGGAGATTCATTCAAGACTATCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD163426             [                                                                                                                                                                                                                                                                                                                                                                           AGATCCGACAGGTACTGGAGAAGGTGGAGAAAGTATTTACGGACAACCTTTCAAGACGGAAATTCATTCAAGACTATCCTTCAATCGTCGTGGCCTTGTTGGGATGGCATGTCTTGAAGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGAGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTA                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD094075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCG GCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCCTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAAACGAATCGAA                                                                                                           ]
[-] EMBL CD094069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCG GCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAAACGAATCGAAA                                                                                                          ]
[-] EMBL CD094068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCG GCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAAACGAATCGAAA                                                                                                          ]
[-] EMBL CD139302             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTCAATCGGGTCCCGAAGAGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCGTGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATTTCAACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGca                                                                                                                                                                                         ]
[-] EMBL BG931666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTTAGGCAGTTACTCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAGCGACAACGGCTACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAATCGAATGGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAACAACCAACAGTTGAAAGAATACCCGTCGGGTGGAGCTGCAGATTG]
[-] EMBL CD068790             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAAAGCTAAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAAAAACAAACAGTg                                 ]


>consensus_10259#0 TCAGTTTTATACATGGTCTATGTGGTGCGCCCTTAACAAAAAAACAACTCAGATATTCAT CTGTTAAGGATTGAGTTGAAGTGTGATATTTTCGACAGTGGTTCCAAAGTATAATCATAA TAATAAGGTCTACACACATTCATCTAACGTCTTTTAATTTTTGGTCATGAGTAACATTTA CGTTACCGAACCAGCAACTCATGGTAAAGTTATTCTAAAGACAACAGTCGGAGAAATAGA AATTGAGTTATGGTCCAAAGAAGCCCCTAAAGCATGCAGAAATTTTGTCCAACTGTGTAT GGAGGGCTACTATGATGACACATCATTTCATCGGCTTGTTCGTGGTTTTATCGTTCAGGG CGGAGATCCGACAGGTACTGGAGAAGGTGGAGAAAGTATTTACGGACAACCTTTCAAGAC GGAGATTCATTCAAGACTATCCTTCAATCGTCGTGGCCTTGTTGGGATGGCATGTCTTGA AGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGG AAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGG TGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTG TGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCA ATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACT ATCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGAAATT TCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCC GGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAA AGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATGAAGCTAA AGCTAAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACT GTCAAAGCAGGCTGAAAACAACCAACAGTTGAAAGAATACCCGTCGGGTGGAGCTGCAGA TTG



consensusID : consensus_10259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 913
fasta sequence
                              [CGAGGGCGAAATCAGAATTAGAAAAAGAAATCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATAAGCTAAGCTAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAAAAACAAACAGTTGAAAGAGAAGGGAGAATTGGAACGTAAGGCCCGTGAAGCTCAAGAGCAAAAAGAACAGGAAGAAGCTGCCTTGGCCCGCTGGGAAGCTAAACAAAAAGGTGAAGTTGATGGTGATTCAAAGACTACTCAACCTTTGGTAGATGATTTAGACACTTTTACAGCTGATTTTGCCAGTTACAAAGCAAAATCAAAAAACGCTATAAAGGGTTCTGAACGTGAAGCTGTAACTTTGTCATTGTTGGAGCGATTTGGTAATCGTCTTCGAAGTGTTATTGGTTCCGAAGAATCAAACGAGGAGCTTGGCAAATTTTCCCCTATGGATGATTGGATGAAAAATCGTTTAGTATCAGAAGTTCCAACACCAGCTAGAAAAGTTCTTGATCCTACTATGCCACATCCTGATCGTTATGATTTGTATGATCCTAGAAATCCACTTAATGTTCGTAAGAGAGGTGGAGATGTGGAAAGTGTGACAGAGAAAAAATCTCGGCGTGTTTAAGGTGTTTCTGACAATTTGGTATTCATTTTTCTGTACATAAGTTGTTGTGAGTTTATTTTATACACTGGAATCCAGCAAGTTTCTTTTAATGAATTAGACAAGTTTTTGTGATTCTTGATTCACTTCCCTTACAAAACAACCAAGTTTGTAAATAACTGATTTTATTAGCATAGACTGTTCGACCCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[+] EMBL CD084029             [CGAGGGCGAAATCAGAATTAGAAAAAGAAATCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATAAGCTAAGCTAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAAAAACAAACAGTTGAAAGAGAAGGGAGAATTGGAACGTAAGGCCCGTGAAGCTCAAGAGCAAAAAGAACAGGAAGAAGCTGCCTTGGCCCGCTGGGAAGCTAAACAAAAAGGTGAAGTTGATGGTGATTCAAAGACTACTCAACCTTTGGTAGATGATTTAGACACTTTTACAGCTGATTTTGCCAGTTACAAAGCAAAATCAAAAAACGCTATAAAGGGTTCTGAACGTGAAGCTGTAACTTTGTCATTGTTGGAGCGATTTGGTAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD074786             [                                                                                                                                                                                                                                                                                                                                             TGATTTTGCCAGTTCCAAAGCAAAATCAAAAAACGCTATAAAGGGTTCTGAACGTGAAGCTGTAACTTTGTCATTGTTGGAGCGATTTGGTAATCGTCTTCGAAGTGTTATTGGTTCCGAAGAATCAAACGAGGAGCTTGGCAAATTTTCCCCTATGGATGATTGGATGAAAAATCGTTTAGTATCAGAAGTTCCAACACCAGCTAGAAAAGTTCTTGATCCTACTATGCCACATCCTGATCGTTATGATTTGTATGATCCTAGAAATCCACTTAATGTTCGTAAGAGAGGTGGAGATGTGGAAAGTGTGACAGAGAAAAAATCTCGGCGTGTTTAAGGTGTTTCTGACAATTTGGTATTCATTTTTCTGTACATAAGTTGTTGTGAGTTTATTTTATACACTGGAATCCAGCAAGTTTCTTTTAATGAATTAGACAAGTTTTTGTGATTCTTGATTCACTTCCCTTACAAAACAACCAAGTTTGTAAATAACTGATTTTATTAGCATAGACT                                                                   ]
[-] EMBL BF937013             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGAAAGTGTGACAGAGAAAAAATCTCGGCGTCTTTAAGGTGTTTCTGACAATTTTGAATTCATTTTTCTGTACATAAGTTGTTGTGAGTATATTTTATACACTGGAATACAGCAAGTTTCTTTTAATGAATTAAACAAGTTTTTGTGATTCTTGATTCACTTCCCTTACAAAGCAATAAAGTTTGTAAATAAGTGATTTTATTAGCATAGCCTGTTCGACCCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]


>consensus_10259#1 CGAGGGCGAAATCAGAATTAGAAAAAGAAATCAAGAACGACAACGGCGACGTGATGCAGC GCACCTTCAAGAAGATAAGCTAAGCTAACGAATCGAAATGTTGCGACAAGAAGCTGAAGA ATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAAAAACAAACAGTTGAAAGAGAA GGGAGAATTGGAACGTAAGGCCCGTGAAGCTCAAGAGCAAAAAGAACAGGAAGAAGCTGC CTTGGCCCGCTGGGAAGCTAAACAAAAAGGTGAAGTTGATGGTGATTCAAAGACTACTCA ACCTTTGGTAGATGATTTAGACACTTTTACAGCTGATTTTGCCAGTTACAAAGCAAAATC AAAAAACGCTATAAAGGGTTCTGAACGTGAAGCTGTAACTTTGTCATTGTTGGAGCGATT TGGTAATCGTCTTCGAAGTGTTATTGGTTCCGAAGAATCAAACGAGGAGCTTGGCAAATT TTCCCCTATGGATGATTGGATGAAAAATCGTTTAGTATCAGAAGTTCCAACACCAGCTAG AAAAGTTCTTGATCCTACTATGCCACATCCTGATCGTTATGATTTGTATGATCCTAGAAA TCCACTTAATGTTCGTAAGAGAGGTGGAGATGTGGAAAGTGTGACAGAGAAAAAATCTCG GCGTGTTTAAGGTGTTTCTGACAATTTGGTATTCATTTTTCTGTACATAAGTTGTTGTGA GTTTATTTTATACACTGGAATCCAGCAAGTTTCTTTTAATGAATTAGACAAGTTTTTGTG ATTCTTGATTCACTTCCCTTACAAAACAACCAAGTTTGTAAATAACTGATTTTATTAGCA TAGACTGTTCGACCCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATT ACCGTACTGCGTA



consensusID : consensus_10259#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [NNNNNNNNNNNNNNNCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGNNNNNNNNNTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCA]

[+] EMBL CD080953             [NNNNNNNNNNNNNNNCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGNNNNNNNNNTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCA]


>consensus_10259#2 NNNNNNNNNNNNNNNCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAA CATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAA GGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGNNNNNNNNNT ATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCG GGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAATTTCTCTCTACTATCT TTCGGCGAAGAAGCAGAGGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGA CAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTTAGCTCAATCCCGGTG ATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAATTAGAAAAAGAA ATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTTGCGACAAGAAGCTGAAGAAT TACGTCGTCAAATTGCACTGTCAAAGCA



consensusID : consensus_10259#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence
                              [GAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTGGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAGGCTACAAAGAATTTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAA]

[+] EMBL CD150653             [GAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTGGCAGTTGTGTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAGGCTACAAAGAATTTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAA]


>consensus_10259#3 GAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGA AAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGT GAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTGGCAGTTGT GTTATACTAAACCCGTATGACGATATTGAACCGAGGCATCGGCCAAAGCAGATAGTTCAA TCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAGGCTACAAAGAATTTCTCTCTACTA TCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTAGTCGAGCTCAAT CCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCAGAA



consensusID : consensus_10259#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [TGAAGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTCAATATACTAATACAGTAAATGCTCTACTGCTCTCCAATTTCGGTTACATTTCAATAACCAGTCACTTGTTAAATTTATTTTCGACATACTTTTCTTTTCGTGCATTATTGTGTCTTTGATTTGTACAGTTGGTTGTAATCCACGCG]

[+] EMBL CD093120             [TGAAGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTACAGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCTCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAGTTGTCAATATACTAATACAGTAAATGCTCTACTGCTCTCCAATTTCGGTTACATTTCAATAACCAGTCACTTGTTAAATTTATTTTCGACATACTTTTCTTTTCGTGCATTATTGTGTCTTTGATTTGTACAGTTGGTTGTAATCCACGCG]


>consensus_10259#4 TGAAGAAAACATGAACGGGAGTCAGTTTTTCTTCACTCTCGGGCCGGCTACAGAACTTAC AGGAAAACATACACTGTTTGGTCGTGTGGCTGGTGAAACTCTATTCAATATGCTGCGGCT CGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCAG TTGTCAATATACTAATACAGTAAATGCTCTACTGCTCTCCAATTTCGGTTACATTTCAAT AACCAGTCACTTGTTAAATTTATTTTCGACATACTTTTCTTTTCGTGCATTATTGTGTCT TTGATTTGTACAGTTGGTTGTAATCCACGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10259#0      TCAGTTTTATACATGGTCTATGTGGTGCGCCCTTAACAAAAAAACAACTCAGATATTCAT 60
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      ------------------------------------------------------------
                                                                                   

consensus_10259#0      CTGTTAAGGATTGAGTTGAAGTGTGATATTTTCGACAGTGGTTCCAAAGTATAATCATAA 120
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      ------------------------------------------------------------
                                                                                   

consensus_10259#0      TAATAAGGTCTACACACATTCATCTAACGTCTTTTAATTTTTGGTCATGAGTAACATTTA 180
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      ------------------------------------------------------------
                                                                                   

consensus_10259#0      CGTTACCGAACCAGCAACTCATGGTAAAGTTATTCTAAAGACAACAGTCGGAGAAATAGA 240
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      ---------------------CGAGGGCGAAATCAGAATTAGAAAAAGAAATCAAGAACG 39
                                                                                   

consensus_10259#0      AATTGAGTTATGGTCCAAAGAAGCCCCTAAAGCATGCAGAAATTTTGTCCAACTGTGTAT 300
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      ACAACGGCGACGTGATGCAGCGCACCTTCAAGAAGATAAGCTAAGCTAACGAATCGAAAT 99
                                                                                   

consensus_10259#0      GGAGGGCTACTATGATGACACATCATTTCATCGGCTTGTTCGTGGTTTTATCGTTCAGGG 360
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      GTTGCGACAAGAAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCAGGCTGAAAA 159
                                                                                   

consensus_10259#0      CGGAGATCCGACAGGTACTGGAGAAGGTGGAGAAAGTATTTACGGACAACCTTTCAAGAC 420
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      AAACAAACAGTTGAAAGAGAAGGGAGAATTGGAACGTAAGGCCCGTGAAGCTCAAGAGCA 219
                                                                                   

consensus_10259#0      GGAGATTCATTCAAGACTATCCTTCAATCGTCGTGGCCTTGTTGGGATGGCATGTCTTGA 480
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ---------------------------------------------------------TGA 3
consensus_10259#1      AAAAGAACAGGAAGAAGCTGCCTTGGCCCGCTGGGAAGCTAAACAAAAAGGTGAAGTTGA 279
                                                                                   

consensus_10259#0      AGAAAACATGAACGGGAGTCAGTTTTTCTTCACTC-TCGGGCCGGCTACAGAACTTACAG 539
consensus_10259#3      -GAAAACATGAACGGGAGTCAGTTTTTCTTCACTC-TCGGGCCGGCTACAGAACTTACAG 58
consensus_10259#2      ----NNNNNNNNNNNNNNNCAGTTTTTCTTCACTC-TCGGGCCGGCTACAGAACTTACAG 55
consensus_10259#4      AGAAAACATGAACGGGAGTCAGTTTTTCTTCACTC-TCGGGCCGGCTACAGAACTTACAG 62
consensus_10259#1      TGGTGATTCAAAGACTACTCAACCTTTGGTAGATGATTTAGACACTTTTACAGCTGATTT 339
                                          **   ***  *   *  *   * *   *  * * ** *   

consensus_10259#0      GAAAACATACACTGTTTGGTCGTGTGGC-TGGTGAAA--CTCTATTCAATATGCTGCGGC 596
consensus_10259#3      GAAAACATACACTGTTTGGTCGTGTGGC-TGGTGAAA--CTCTATTCAATATGCTGCGGC 115
consensus_10259#2      GAAAACATACACTGTTTGGTCGTGTGGC-TGGTGAAA--CTCTATTCAATATGCTGCGGC 112
consensus_10259#4      GAAAACATACACTGTTTGGTCGTGTGGC-TGGTGAAA--CTCTATTCAATATGCTGCGGC 119
consensus_10259#1      TGCCAGTTACAAAGCAAAATCAAAAAACGCTATAAAGGGTTCTGAACGTGAAGCTGTAAC 399
                           *  ****  *     **      *    * **    ***   *   * ****   *

consensus_10259#0      TCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCA 656
consensus_10259#3      TCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTGGCA 175
consensus_10259#2      TCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGNN 172
consensus_10259#4      TCGGTGAAGGAGATATAGGTCGGAACGAACGACCTTTAAGGCTTCATCGGATTGTTAGCA 179
consensus_10259#1      TTTGTCATTGTTGGAGCGATTTGG--TAATCGTCTTCGAAGTGTTATTGGTTCCGAAGAA 457
                       *  ** *  *    *  * *  *    **    ***  * *  * ** ** *     *  

consensus_10259#0      GTTGT-GTTATACTAAACCCGTATG-AC-----GATATTGAACCGAGGCATCGGCCAAAG 709
consensus_10259#3      GTTGT-GTTATACTAAACCCGTATG-AC-----GATATTGAACCGAGGCATCGGCCAAAG 228
consensus_10259#2      NNNNN-NNTATACTAAACCCGTATG-AC-----GATATTGAACCGAGGCATCGGCCAAAG 225
consensus_10259#4      GTTGTCAATATACTAATACAGTAAATGC-----TCTACTGCTCTCCAATTTCGGTTACAT 234
consensus_10259#1      TCAAACGAGGAGCTTGGCAAATTTTCCCCTATGGATGATTGGATGAAAAATCGTTTAGTA 517
                                   **       *     *       *  *           ***   *   

consensus_10259#0      CAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAAT 769
consensus_10259#3      CAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAGGCTACAAAGAAT 288
consensus_10259#2      CAGATAGTTCAATCGGGTCCCGAAGGGGAACTTAAAGTCACTGCAAAAGCTACAAAGAAT 285
consensus_10259#4      TTCAATAACCAGTCA---CTTG---------TTAAATTTATT-------TTCGACATACT 275
consensus_10259#1      TCAGAAGTTCCAACACCAGCTAGAAAAGTTCTTGATCCTACTATGCCACATCCTGATCGT 577
                                *   *                 ** *    * *        *    *   *

consensus_10259#0      TTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTA 829
consensus_10259#3      TTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGGAAGAAATTGTAAACACAGTA 348
consensus_10259#2      TTCTCTCTACTATCTTTCGGCGAAGAAGCAGAGGAAGAGNNNNNNNNNNNNNNNNNNNNN 345
consensus_10259#4      TTTCTTTTCGTGCATTATTGTGTCTTTG-ATTTGTACAGTTGGTTGTAATCCACGCG--- 331
consensus_10259#1      TATGATTTGTATGATCCTAGAAATCCACTTAATGTTCGTAAGAGAGGTGGAGATGTGGAA 637
                       *    * *      *    *             *                          

consensus_10259#0      GTCGAGAAATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTT 889
consensus_10259#3      GTCGAG------------------------------------------------------ 354
consensus_10259#2      NNNNNNNNATTTCGACAAAAAAGTAAAAGTGCTCATGATCTCCTTTCTGATCCTCGTCTT 405
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      AGTGTGACAG---AGAAAAAATCTCGGCGTGTTTAAGGTGTTTCTGACAATT------TG 688
                                                                                   

consensus_10259#0      AGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCA 949
consensus_10259#3      --CTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCA 412
consensus_10259#2      AGCTCAATCCCGGTGATGATAAGTGACGAAGATGCTGAGGCAGTTAATCGTGCGAAATCA 465
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      GTATTCATTTTTCTGTACATAAGTTGTTGTGA-GTTTATTTTATACACTGGAATCCAGCA 747
                                                                                   

consensus_10259#0      GAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTCAAGAA 1009
consensus_10259#3      GAA--------------------------------------------------------- 415
consensus_10259#2      GAATTAGAAAAAGAAATTCAAGAACGACAACGGCGACGTGATGCAGCGCACCTTTGCGAC 525
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      AGTTTCTTTTAATGAATTAGACAAGTTTTTGTGATTCTTGATTCACTTCCCTTACAAAAC 807
                                                                                   

consensus_10259#0      GAT-GAAGCTAAAGCTAAACGAATCGAAATGTTGCGACAAGAAGCTGAAGAATTACGTCG 1068
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      AAG-AAGCTGAAGAATTACGTCGTCAAATTGCACTGTCAAAGCA---------------- 568
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      AACCAAGTTTGTAAATAACTGATTTTATTAGCATAGACTGTTCGACCCAAAAAAAAAAAA 867
                                                                                   

consensus_10259#0      TCAAATTGCACTGTCAAAGCAGGCTGAAAACAACCAACAGTTGAAAGAATACCCGTCGGG 1128
consensus_10259#3      ------------------------------------------------------------
consensus_10259#2      ------------------------------------------------------------
consensus_10259#4      ------------------------------------------------------------
consensus_10259#1      AAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA-------------- 913
                                                                                   

consensus_10259#0      TGGAGCTGCAGATTG 1143
consensus_10259#3      ---------------
consensus_10259#2      ---------------
consensus_10259#4      ---------------
consensus_10259#1      ---------------
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)