These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1203 fasta sequence [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA-TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA-TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT-TGGGC-TTGATTTTG-GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTGCAT] [+] EMBL AI975206 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGTTACATCCTCAGCACTGTGTGTGGAAAGACTGAATCTt ] [+] EMBL BE431220 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGATTCCATTGTTTCCTTCG CACAAAGTGACTGg ] [+] EMBL AW017001 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCA ] [-] EMBL CD084299 [ AAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGCGAGTACATAGTTGCATGAGCAATAAATGTATTATCCAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCCGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGAT GCCGc ] [+] EMBL CD062543 [ gTTCTGTCGTCACAATGTGACCGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCCGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC T ] [+] EMBL CD063190 [ ccTCCTTTACAAAGTGAGTACATACTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGAT ] [-] EMBL CD084260 [ TACATAGTTGCATGAGCAATAAATGTAGTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGATTATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTATCTGGGCGTGGATTTTGCGTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAG ] [-] EMBL CD084241 [ GTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC TTGATTTTG GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAc ] [+] EMBL CD068003 [ TATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAGGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC TTGATTTTG GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTGCAT] [+] EMBL CD200385 [ AAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGNTGCGTGAATCAGAGCGTTTCCCCTTCACGTTNGAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTG ] [-] EMBL CD071331 [ TCTTGA TTTCTAGTC GTAAGCCAAATGGTTCGGAGCAAACAAACNCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTNTGGTCTGTATTTCCTGCCATTCATNTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGCTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTT ] [-] EMBL CD071382 [ aTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACNCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTT ] [-] EMBL CD064224 [ ATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCG ] consensusID : consensus_10260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [TATCCAATGAAGAGTGAAATAGATCACTGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGCTCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATCGAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTATTATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGCCGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCACGCTTG] [-] EMBL CD061233 [TATCCAATGAAGAGTGAAATAGATCACTGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGCTCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATCGAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTATTATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGCCGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCACGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10260#0 TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATT 60 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 TGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATG 120 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 ATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAG 180 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 TGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGA 240 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 GTCGAGATCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAA 300 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 GTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCAC 360 consensus_10260#1 ---------------------------------TATCCAATGAAGAGTGAAATAGATCAC 27 **** ******** ******** **** consensus_10260#0 TGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTC 420 consensus_10260#1 TGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGC 87 ** ******** ********************************** *** ****** * consensus_10260#0 TCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATC 480 consensus_10260#1 TCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATC 147 ****** ************ ******************** ****** * ***** **** consensus_10260#0 GAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTAT 540 consensus_10260#1 GAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTAT 207 ******** * ************************************************* consensus_10260#0 TATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGC 600 consensus_10260#1 TATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGC 267 **************** ************************ **** ********** ** consensus_10260#0 CGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGAT 660 consensus_10260#1 CGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGAT 327 **** ******************** ** ******************************* consensus_10260#0 CAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGT 720 consensus_10260#1 CAACAAGTGACAATGCTTTCTC-ACGCTTG------------------------------ 356 ********************** *** * consensus_10260#0 ATTGGGCTTGATTTTGGTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAA 780 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 ATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTG 840 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 GTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGT 900 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 AGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCT 960 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 TGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGC 1020 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 GTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTC 1080 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 CTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGC 1140 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 AGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTG 1200 consensus_10260#1 ------------------------------------------------------------ consensus_10260#0 CAT 1203 consensus_10260#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||