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Schistosoma mansoni
cluster # 10297 cluster # 10297       Sequences # 15       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10297#0 length = 700 sequences # 6  
consensus_10297#1 length = 600 sequences # 1  
consensus_10297#2 length = 566 sequences # 2  
consensus_10297#3 length = 560 sequences # 1  
consensus_10297#4 length = 451 sequences # 2  
consensus_10297#5 length = 259 sequences # 3  

consensusID : consensus_10297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 700
fasta sequence
                              [CAGCTGAGAGGAAGGCCAAAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCCTATCAGTTTGCAAGTAAAATTAATTTATTCACTTTTTCCACATTTTTATGTTCTAACTGGTACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTTGGTGATGTGATTTATTTTGTTCAGTATGAATAACAAGGATTATGGAATGAAGTGGATTTTTTTTTCATTATTAGTGCTGTAAATCTTCTAAATATACAATGATTTCCTTAAATAACTGAAATGAAAACTTGACTAAAATGTAGAATAAAGATTATTTTGTGATTAAATTAGATTTTATAGGAACGATGAAAAACTGTTAAGCACAGTTGGATGGATCCTCGCACACTTGANAAATAATCATCGTCTCAAGACAACATTAACGAATGAATTTGTTGAAAACTAAGGTGCACCAAACAG]

[+] EMBL CD149633             [CAGCTGAGAGGAAGGCCAAAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCACGACACAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCCTATCAGTTTGCAAGTGAAATTAATTCATTCACTTTTTCCACATTTATATGTTCTAACTGGTACTTTCAATC                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD149671             [                  AAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCCTATCAGTTTGCAAGTAAAATTAATTTATCCACTTTTTCCACATTTTTATGTTCTAACTGGTACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTTGGTGATGTGATTTATTTTGTTCAGTATGAATAACAAGGATTATGGAATGAAGTGGATTTTTTTTTCATTATTAGTGCTGTAAATCTTCTAAATATACAATGATTTCCTTAAATAACTGAAATGAAAACTTGACTAAAATGTAGAATAAAGATTATTTTGTGATTAAATTAGATTTTATAGGAACGATGAAAAACTGTTAAGCACAGTTGGATGGATCCTCGCACACTTGANAAATAATCATCGTCTCAAGACAACATTAACGAATGAATTTGTTGAAAACTAAGGTGCACCAAACA ]
[+] EMBL CD149555             [                  AAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCCTATCAGTTTGCAAGTAAAATTAATTTATTCACTTTTTCCACATTTTTATGTTCTAACTGGTACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTTGGTGATG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD149319             [                  AAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCATGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAATAAATACACTTTTGAGAAATAAGTGTGAATTCTATCACTTTGCAAGTAAAATTA                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD149300             [                  AAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGGATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCANGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAAATCCATCATATAAATCCATATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATC                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD149304             [                                                                                                                                                                                          CATATAAATCCACATGAAATGATCTCAATGAAAGTAATTCGCCTTTTTTAAAAAAAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCCTATCAGTTTGCAAGTAAAATTAATTTATTCACTTTTTCCACATTTTTATGTTCTAACTGGTACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTTGGTGATGTGATTTATTTTGTTCAGTATGAATAACAAGGATTATGGAATGAAGTGGATTTTTTTTTCATTATTAGTGCTGTAAATCTTCTAAATATACAATGATTTCCTTAAATAACTGAAATGAAAACTTGACTAAAATGTAGAATAAAGATTATTTTGTGATTAAATTAGACTTTATAGGAACGATGAAAAACTGTTAAGCACAGTTGGATGGATCCTCGCACACTTGAAAAATAATCATCGTCTCAAGACAACATTAACGAATGAATTTGTTGAAAACTAAGGTGCACCAAACAG]


>consensus_10297#0 CAGCTGAGAGGAAGGCCAAAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGG ATGAATAACAACTGGAAAGAACTGGAAAGGAAGGCTCAGGACAGAGTTGGATGGAGAATG CTGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTAAGTAA ATCCATCATATAAATCCACATGAAATGATCTCAATGAAACTAATTCGCCTTTTTTAAAAA AAACTTATCTATATAACATAATTTTCAAGAAATACACTTTTGAGAAATAAGTGTGAATCC TATCAGTTTGCAAGTAAAATTAATTTATTCACTTTTTCCACATTTTTATGTTCTAACTGG TACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTTGGTGATGTGATTTATTT TGTTCAGTATGAATAACAAGGATTATGGAATGAAGTGGATTTTTTTTTCATTATTAGTGC TGTAAATCTTCTAAATATACAATGATTTCCTTAAATAACTGAAATGAAAACTTGACTAAA ATGTAGAATAAAGATTATTTTGTGATTAAATTAGATTTTATAGGAACGATGAAAAACTGT TAAGCACAGTTGGATGGATCCTCGCACACTTGANAAATAATCATCGTCTCAAGACAACAT TAACGAATGAATTTGTTGAAAACTAAGGTGCACCAAACAG



consensusID : consensus_10297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [TTTTTTTTTTTTTTTTTAAAGAAAAACTATTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTATAGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGAGGGTTGGGCATGGGGTTAGCGATGCCAATCCTATAGAAAACAACTCTCCTGAGAAACGCTAACCAGAACTGGTGGGCGGCCTATGCTCCTTTCACGAGGCGTAGCAGGCGTAAGTAAGTAAGTAAGTGAGTAAGTCCTTGATTATACATCAAGAAAATCTTATAGTTGTCTCAATACTATAGTGAATGAATATTCAATAATGAGAAACGTTTAATGGAAGATAACATGACAAACGATACATGAACATGATCTCCTAGATNCTTCAAAATGATATGATAGGTATAGCATCCTCCGTGCCGGCACAA]

[+] EMBL AI395185             [TTTTTTTTTTTTTTTTTAAAGAAAAACTATTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTATAGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGAGGGTTGGGCATGGGGTTAGCGATGCCAATCCTATAGAAAACAACTCTCCTGAGAAACGCTAACCAGAACTGGTGGGCGGCCTATGCTCCTTTCACGAGGCGTAGCAGGCGTAAGTAAGTAAGTAAGTGAGTAAGTCCTTGATTATACATCAAGAAAATCTTATAGTTGTCTCAATACTATAGTGAATGAATATTCAATAATGAGAAACGTTTAATGGAAGATAACATGACAAACGATACATGAACATGATCTCCTAGATNCTTCAAAATGATATGATAGGTATAGCATCCTCCGTGCCGGCACAA]


>consensus_10297#1 TTTTTTTTTTTTTTTTTAAAGAAAAACTATTCATTACAAATTTGTTAATGATAGCATAGA AGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATA AAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACC ATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAA CTCCGCCTGTAGCTCTTATAGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGAGGGTT GGGCATGGGGTTAGCGATGCCAATCCTATAGAAAACAACTCTCCTGAGAAACGCTAACCA GAACTGGTGGGCGGCCTATGCTCCTTTCACGAGGCGTAGCAGGCGTAAGTAAGTAAGTAA GTGAGTAAGTCCTTGATTATACATCAAGAAAATCTTATAGTTGTCTCAATACTATAGTGA ATGAATATTCAATAATGAGAAACGTTTAATGGAAGATAACATGACAAACGATACATGAAC ATGATCTCCTAGATNCTTCAAAATGATATGATAGGTATAGCATCCTCCGTGCCGGCACAA



consensusID : consensus_10297#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence
                              [AAACTGAAGCTAAAGAAACGCTGGACAACTGGTGTAACGGCACCACAAAGATTTAATACAGCCTTCCTTCGAGATACTAACAAACTCAAAGAATTCAAGATAACTCTCAACGACAGATTCCAATCTCTACAGGATCTAATGAAAGAAGAAACTAAGATGGAGGACAACTGGAAAGGAATCAAAGAGGCCTTAACTTTAACGTGTCACGAGGTTCTGGGCCGCATGAAACATCATCATCATATGGAATTGATCTCTGTGGAAACCCTGGACAAGATTGAAGAAAGGAAGAACAAGAAGACAGGAATTAACAACAGTCGAACATGAGCAGAGAAAGTCAACGAGCAAGCAGAGTACGCAGAAGCAAACAAGGAAGTGAAGAAGACCATTAAAGCTAACAAGCAGAAATACATGGGCGAACTAGCAACGACGGCGGANAGAGTTGCCAGAGAAGGGAATATGAAACAACCATATGATACAACGAAGAAACTGGCAGGGTAAAATAAGGTCAATCAGAGATACTTATCAAGGACAGAGAAGGAAAGATAATCACTGAGATTCAAGAACAG]

[+] EMBL CD145736             [AAACTGAAGCTAAAGAAACGCTGGACAACTGGTGTAACGGCACCACAAAGATTTAATACAGCCTTCCTTCGAGATACTAACAAACTCAAAGAATTCAAGATAACTCTCAACGACAGATTCCAATCTCTACAGGATCTAATGAAAGAAGAAACTAAGATGGAGGACAACTGGAAAGGAATCAAAGAGGCCTTAACTTTAACGTGTCACGAGGTTCTGGGCCGCATGAAACATCATCATCATATGGAATTGATCTCTGTGGAAACCCTGGACAAGATTGAAGAAAGGAAGAACAAGAAGACAGGAATTAACAACAGTCGAACATGAGCAGAGAAAGTCAACGAGCAAGCAGAGTACGCAGAAGCAAACAAGGAAGTGAAGAAGACCATTAAAGCTAACAAGCAGAAATACATGGGCGAACTAGCAACGACGGCGGANAGAGTTGCCAGAGAAGGGAATATGAAACAACCATATGATACAACGAAGAAACTGGCAGGGTAAAATAAGGTCAATCAGAGATACTTATCAAGGACAGAGAAGGAAAGATAATCACTGAGATTCAAGAACAG]
[-] EMBL CD142942             [                                              AAAGATTNAATACAGCCTCCTTTCGAGATACTAACAAACTCAAAGAATTCAAGATAACTCTCAACGACAGATTCCAATCTCTACAGGATCTAATGAAAGAAGAAACTAAGATGGAAGACAACTGGAAAGGAATCAAAGAGGCCTTAACTTTAACGTGTCACGAGGTTCTGGGCCGCATGAAACATCATCATCATATGGAATTGATCTCTGTGGAAACCCTGGACAAGATTGAAGAAAGGAAGAACAAGAAGACAGGAATTAACAACAGTCGAACATGAGCAGAGAAAGTCAACGAGCAAGCAGAGTACGCAG                                                                                                                                                                                                                ]


>consensus_10297#2 AAACTGAAGCTAAAGAAACGCTGGACAACTGGTGTAACGGCACCACAAAGATTTAATACA GCCTTCCTTCGAGATACTAACAAACTCAAAGAATTCAAGATAACTCTCAACGACAGATTC CAATCTCTACAGGATCTAATGAAAGAAGAAACTAAGATGGAGGACAACTGGAAAGGAATC AAAGAGGCCTTAACTTTAACGTGTCACGAGGTTCTGGGCCGCATGAAACATCATCATCAT ATGGAATTGATCTCTGTGGAAACCCTGGACAAGATTGAAGAAAGGAAGAACAAGAAGACA GGAATTAACAACAGTCGAACATGAGCAGAGAAAGTCAACGAGCAAGCAGAGTACGCAGAA GCAAACAAGGAAGTGAAGAAGACCATTAAAGCTAACAAGCAGAAATACATGGGCGAACTA GCAACGACGGCGGANAGAGTTGCCAGAGAAGGGAATATGAAACAACCATATGATACAACG AAGAAACTGGCAGGGTAAAATAAGGTCAATCAGAGATACTTATCAAGGACAGAGAAGGAA AGATAATCACTGAGATTCAAGAACAG



consensusID : consensus_10297#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [CCATTGTGATTATTCAGAGTGGATTGGCACTGATGACCATTAGCCCGTCGCTAAACAGTCAGTTCAACGTGCTGGTTAACCTGGCCGTGGTGACCAATATCATTCCGTATATTCTGTCAATGGCGGCATTAGTCATTATTCAGAAGGTCGCTAATGTGCCCCCCTCAAAAGCGAAAGTTGCAAACTTTGTTGCTTTTGTTGGCGCGATGTATAGCTTTTATGCGCTGTACTCATCCGGGGAAGAAGCCATGCTGTACGGTTCCATCGTGACCTTCCTTGGTTGGACACTGTATGGTCTGGTATCACCACGCTTTGAACTGAAAAATAAACACGNGTAATAAAACAAAGTAAAAAAGGGCGATTGAATGATCGCCCTTTTCTGTTTGTGGCAAAGGTGGCAAAGGCGGCAAAGGTGGCACTTACAACCCAGCCATTATTGAGGGGNTACTGAGGCACCAAGTGAGTTGGGATCATTCTAATTTGTTGGTGCACACTCTTCACTGTCCTATTTTCTAAACACCTCTAAATCAACATACTGTAAATAAGCGGGTTTGATATCT]

[+] EMBL BG931534             [CCATTGTGATTATTCAGAGTGGATTGGCACTGATGACCATTAGCCCGTCGCTAAACAGTCAGTTCAACGTGCTGGTTAACCTGGCCGTGGTGACCAATATCATTCCGTATATTCTGTCAATGGCGGCATTAGTCATTATTCAGAAGGTCGCTAATGTGCCCCCCTCAAAAGCGAAAGTTGCAAACTTTGTTGCTTTTGTTGGCGCGATGTATAGCTTTTATGCGCTGTACTCATCCGGGGAAGAAGCCATGCTGTACGGTTCCATCGTGACCTTCCTTGGTTGGACACTGTATGGTCTGGTATCACCACGCTTTGAACTGAAAAATAAACACGNGTAATAAAACAAAGTAAAAAAGGGCGATTGAATGATCGCCCTTTTCTGTTTGTGGCAAAGGTGGCAAAGGCGGCAAAGGTGGCACTTACAACCCAGCCATTATTGAGGGGNTACTGAGGCACCAAGTGAGTTGGGATCATTCTAATTTGTTGGTGCACACTCTTCACTGTCCTATTTTCTAAACACCTCTAAATCAACATACTGTAAATAAGCGGGTTTGATATCT]


>consensus_10297#3 CCATTGTGATTATTCAGAGTGGATTGGCACTGATGACCATTAGCCCGTCGCTAAACAGTC AGTTCAACGTGCTGGTTAACCTGGCCGTGGTGACCAATATCATTCCGTATATTCTGTCAA TGGCGGCATTAGTCATTATTCAGAAGGTCGCTAATGTGCCCCCCTCAAAAGCGAAAGTTG CAAACTTTGTTGCTTTTGTTGGCGCGATGTATAGCTTTTATGCGCTGTACTCATCCGGGG AAGAAGCCATGCTGTACGGTTCCATCGTGACCTTCCTTGGTTGGACACTGTATGGTCTGG TATCACCACGCTTTGAACTGAAAAATAAACACGNGTAATAAAACAAAGTAAAAAAGGGCG ATTGAATGATCGCCCTTTTCTGTTTGTGGCAAAGGTGGCAAAGGCGGCAAAGGTGGCACT TACAACCCAGCCATTATTGAGGGGNTACTGAGGCACCAAGTGAGTTGGGATCATTCTAAT TTGTTGGTGCACACTCTTCACTGTCCTATTTTCTAAACACCTCTAAATCAACATACTGTA AATAAGCGGGTTTGATATCT



consensusID : consensus_10297#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence
                              [AATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAATGAAGTAGGTTCTCACGTATTTGATGATTAACAAGACTTTCCTCTGTTACTAAATCACTTGTAAACGCAGTCCCTTCGTTTCTCAATACATCTCGGAGTTTGTCAGGACAGTCATTCTTAATCGCTTGCTCAGCTTTGCTCAATGAGTTGGAAAACCCTTCCAAAAGCTCAGCCATGTTGAAGTTTCCAAAAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGACCTATTCATGGGGCGCAAACGACCTTGAGGAATCC]

[+] EMBL CD181728             [AATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACCAAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAATGAAGTAGGTTCTCACGTATTTGATGATTAACAAGACTTTCCTCTGTTACTAAATCACTTGTAAACGCAGTCCCTTCGTTTCTCAATACATCTCGGAGTTTGTCAGGACAGTCATTCTT                                                                                                                                                                                        ]
[+] EMBL CD155030             [                                                                        GGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACACCGACTGGCTGATTGGTGAACAGCGAAATGAAGTAGGTTCTCACGTATTTGATGATTAACAAGACTTTCCTCTGTTACTAAATCACTTGTAAACGCAGTCCCTTCGTTTCTCAATACATCTCGGAGTTTGTCAGGACAGTCATTCTTAATCGCTTGCTCAGCTTTGCTCAATGAGTTGGAAAACCCTTCCAAAAGCTCAGCCATGTTGAAGTTTCCAAAAACAGAGTATCAAGAGGAAGTAGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGACCTATTCATGGGGCGCAAACGACCTTGAGGAATCC]


>consensus_10297#4 AATGAGATAAACAACAGGCAAGTAATGTCGCCTCATAGCTAAGTCTAATGGAGTATGACC AAGAAAGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATACA CCGACTGGCTGATTGGTGAACAGCGAAATGAAGTAGGTTCTCACGTATTTGATGATTAAC AAGACTTTCCTCTGTTACTAAATCACTTGTAAACGCAGTCCCTTCGTTTCTCAATACATC TCGGAGTTTGTCAGGACAGTCATTCTTAATCGCTTGCTCAGCTTTGCTCAATGAGTTGGA AAACCCTTCCAAAAGCTCAGCCATGTTGAAGTTTCCAAAAACAGAGTATCAAGAGGAAGT AGCCATTGGGATTACTTGGATACACAGACGTATACTAGCTAGGTCACACATCCGGACCTA TTCATGGGGCGCAAACGACCTTGAGGAATCC



consensusID : consensus_10297#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 259
fasta sequence
                              [CTGGCTGAATTACTTGTAATATATGGTATTGAGATCGATTGGGTGTCAAAGATAAGTTTATTTCAGGGTTTTATTGCACGACAAGATTACGAATAAATATTACATAATTATTTGCCTCACAATATAACTTAGAAGCATTTACGGTGAACAATACCCGGACCAGATTCATCATATTCTTGTTTGGAAATCCACATCTGTTGGAATGTAGACAATGACGCCAAAATAGAGCCGGCATCTATCACAATAATAATTAAACTAT]

[+] EMBL BG931504             [CTGGCTGAATTACTTGTAATATATGGTATTGAGATCGATTGGGTGTCAAAGATAAGTATATTTCAGGGTTTTATTGCGCGACAAGATTACGAATAAATATTACATAATTATTTGCCTCACAATATAACTTAGAAGCATTTACGGTGAACAATACCCGGACCAGATTCATCATATTCTTGTATGGAAATCCACATCTGTTGGAATGTAGACAATGACGCCAAAATAGA                                ]
[+] EMBL BG930492             [                                            GTCAAAGATAAGTTTATTTCAGGGTTTTATTGCACGACAAGATTACGAATAAATATTACATAATTATTTGCCTCACAATATAACTTAGAAGCATTTACGGTGAACAATACCCGGACCAGATTCATCATATTCTTGTTTGGAAATCCACATCTGTTGGAATGTAGACAATGACGCCAAAATAGAGCCGGCATCTATCACAATA             ]
[+] EMBL BG930997             [                                            tTCAAAGATAAGTTTATTTCAGGGTTTTATTGCACGACAAGATTACGAATAAATATTACATAATTATTTGCCTCACAATATAACTTAGAAGCATTTACGGTGAACAATACCCGGACCAGATTCATCATATTCTTGTTTGGAAATCCACATCTGTTGGAATGTAGACAATGACGCCAAAATAGACCCCCCGTCTGGGGGTCAAATAATTAAACTAT]


>consensus_10297#5 CTGGCTGAATTACTTGTAATATATGGTATTGAGATCGATTGGGTGTCAAAGATAAGTTTA TTTCAGGGTTTTATTGCACGACAAGATTACGAATAAATATTACATAATTATTTGCCTCAC AATATAACTTAGAAGCATTTACGGTGAACAATACCCGGACCAGATTCATCATATTCTTGT TTGGAAATCCACATCTGTTGGAATGTAGACAATGACGCCAAAATAGAGCCGGCATCTATC ACAATAATAATTAAACTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10297#0      CAGCTGAGAGGAAGGCCAAAGAACTCACTACGCCGGGAAATAGAAGCCGATATGAAAAGG 60
consensus_10297#1      --------------------TTTTTTTTTTTTTTTTTAAAGAAAAACTATTCATTACAAA 40
consensus_10297#5      -----------CTGGCTGAATTACTTGTAATATATGGTATTGAGATCGATTGGGTGTCAA 49
consensus_10297#4      ---------------------------------------------------------AAT 3
consensus_10297#3      ----------CCATTGTGATTATTCAGAGTGGATTGGCACTGATGACCATTAGCCCGTCG 50
consensus_10297#2      ---------------------AAACTGAAGCTAAAGAAACGCTGGACAACTGGT--GTAA 37
                                                                                   

consensus_10297#0      ATGAATAACAACTGGAAAGAACTG--GAAAGGAAGGCTCAGGACAGAG-TTG-GATGGAG 116
consensus_10297#1      TTTGTTAATGATAGCATAGA---------AGCAATGATAAAAACAGAT-CTATGATAAAC 90
consensus_10297#5      AGATAAGTTTATTTCAGGGT----------TTTATTGCACGACAAGAT-TACGAATAAAT 98
consensus_10297#4      GAGATAAACAACAGGCAAGTAATG--TCGCCTCATAGCTAAGTCTAAT-GGAGTATGACC 60
consensus_10297#3      CTAAACAGTCAGTTCAACGTGCTGGTTAACCTGGCCGTGGTGACCAATATCATTCCGTAT 110
consensus_10297#2      CGGCACCACAAAGATTTAATACAGCCTTCCTTCGAGATACTAACAAACTCAAAGAATTCA 97
                                 *                                   *             

consensus_10297#0      AATGC-TGGTGAGCGGCCTATACTCCTCGACGAGGGGTAATAGGCGTAAGTAAGTAAGTA 175
consensus_10297#1      AATGT-AAATAAATA-CATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGAT 148
consensus_10297#5      ATTACATAATTATTTGCCTCACAATATAACTTAGAAGCATTTACGGTGAACAATACCCGG 158
consensus_10297#4      AAGAA--AGTTAGGGGATTCTGAATTCCAATAGAAAGGTGGATTTAAGAGCAGATTAATA 118
consensus_10297#3      ATTCTGTCAATGGCGGCATTAGTCATTATTCAGAAGGTCGCTAATGTGCCCCCCTCAAAA 170
consensus_10297#2      AGATAACTCTCAACGACAGATTCCAATCTCTACAGGATCTAATGAAAGAAGAAACTAAGA 157
                       *                                                           

consensus_10297#0      AGTAAATCCAT----CATATAAATCCACATGAAATGATC-TCAATG--AAACTAAT-TCG 227
consensus_10297#1      CAAAAATTGAT----CTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAA-AAG 203
consensus_10297#5      ACCAGATTCAT----CATATTCTTGTTTGGAAATCCACATCTGTTGG-AATGTAGA-CAA 212
consensus_10297#4      CACCGACTGG-----CTGATTGGTGAACAGCGAAATGAAGTAGGTTCTCACGTATT-TGA 172
consensus_10297#3      GCGAAAGTTGCAAACTTTGTTGCTTTTGTTGGCGCGATGTATAGCTTTTATGCGCTGTAC 230
consensus_10297#2      TGGAGGACAACTG--GAAAGGAATCAAAGAGGCCTTAACTTTAACGTGTCACGAGGTTCT 215
                                              *                                    

consensus_10297#0      CCTTTTTTAAAAAAAACTTATCTATATAACA-TAATTTTCAAGAAATACA---CTTTTGA 283
consensus_10297#1      CGAT---AAGAAAAAATTAGTGTTTGTCTCT-TGATTATAACTCCGCCTGTAGCTCTTAT 259
consensus_10297#5      TGACGCCAAAATAGAGCCGGCATCTATCACAATAATAATTAAACTAT------------- 259
consensus_10297#4      TGATT----AACAAGACTTTCCTCTGTTACT-AAATCACTTGTAAACGCA---GTCCCTT 224
consensus_10297#3      TCATCCGGGGAAGAAGCCATGCTGTACGGTT-CCATCGTGACCTTCCTTGGTTGGACACT 289
consensus_10297#2      GGGCCGCATGAAACATCATCATCATATGGAATTGATCTCTGTGGAAACCCTGGACAAGAT 275
                                 *             *         **                        

consensus_10297#0      GAAATAAGTGTGAATCCTATCAGTTTGCAAGTAAAATTAATTTATTCACTTTTTCCACAT 343
consensus_10297#1      AGAGTTACTGCCGGTCCCA--AGCCCGGGTAAAGGAGAGGGTTGGGCATGGGGTTAGCGA 317
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      CGTTTCTCAATACATCTCGGAGTTTGTCAGGACAGTCATTCTTAATCGCTTGCTCAGCTT 284
consensus_10297#3      GTATGGTCTGGTATCACCACGCTTTGAACTGAAAAATAAACACGNGTAATAAAACAAAGT 349
consensus_10297#2      TGAAGAAAGGAAGAACAAGAAGACAGGAATTAACAACAGTCGAACATGAGCAGAGAAAGT 335
                                                                                   

consensus_10297#0      TTTTATGTTCTAACTGGTACTTTCAATCTCATTCAATTTCTTTTGATATTATTTACTTTT 403
consensus_10297#1      TGCCA-ATCCTATAGAAAACA---ACTCTCCTGAGA--------AACGCTAACCAGAACT 365
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      TGCTCAATGAGTTGGAAAACC------CTTCCAAAAGCTC----AGCCATGTTGAAGTTT 334
consensus_10297#3      AAAAAAGGGCGATTGAATGATC---GCCCTTTTCTGTTTGTGGCAAAGGTGGCAAAGGCG 406
consensus_10297#2      CAACG-AGCAAGCAGAGTACGCAGAAGCAAACAAGGAAGTGAAGAAGACCATTAAAGCTA 394
                                                                                   

consensus_10297#0      GGTGATGTGATTTAT--------TTTGTTCAGTATGAATAACAAGGAT---TATGGAATG 452
consensus_10297#1      GGTGG-GCGGCCTATGC------TCCTTTCACGAGGCGTAGCAGGCGTAAGTAAGTAAGT 418
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      CCAAAAACAGAGTAT---------CAAGAGGAAGTAGCCATTGGGATTACTTGGATACAC 385
consensus_10297#3      GCAAAGGTGGCACTTACAACCCAGCCATTATTGAGGGGNTACTGAGGCACCAAGTGAGTT 466
consensus_10297#2      ACAAGCA-GAAATACATGGGCGAACTAGCAACGACGGCGGANAGAGTTGC-CAGAGAAGG 452
                                                                                   

consensus_10297#0      AAGTGGATTTTTTTTTCATTATTAGTGCTGTAAATCTTCTAAATATACAATGATTTCCTT 512
consensus_10297#1      AAGTGAGTAAGTCCTTGATTATACATCAAGAAAATCTTATAGTTGTCTCAATACTATAGT 478
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      AGACGTATACTAGCTAGGTCACACATCCGGACCTATTCATGGGGCGCAAACGACCTTGAG 445
consensus_10297#3      GGGATCATTCTAATTTGTTGGTGCACACTCTTCACTGTCCTATTTTCTAAACACCTC--T 524
consensus_10297#2      GAATATGAAACAACCATATGATACAACGAAGAAACTGGCAGGGTAAAATAAGGTCAATCA 512
                                                                                   

consensus_10297#0      AAATAACTGA--AATGAAAACTTGACTAAAATGTAGAATAA-AGATTATTTTGTGATTAA 569
consensus_10297#1      GAATGAATATTCAATAATGAGAAACGTTTAATGGAAGATAACATGACAAACGATACATGA 538
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      GAATCC------------------------------------------------------ 451
consensus_10297#3      AAATCAACATACTGTAAATAAGCGGGTTTGATATCT------------------------ 560
consensus_10297#2      GAGATACTTATCAAGGACAGAGAAGGAAAGATAATCACTGAGATTCAAGAACAG------ 566
                                                                                   

consensus_10297#0      ATTAGATTTTATAGGAACGATGAAAAACTGT--TAAGCACAGTTGGATGGATCCTCGCAC 627
consensus_10297#1      ACATGATCTCCTAGATNCTTCAAAATGATATGATAGGTATAGCATCCTCCGTGCCGGCAC 598
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      ------------------------------------------------------------
consensus_10297#3      ------------------------------------------------------------
consensus_10297#2      ------------------------------------------------------------
                                                                                   

consensus_10297#0      ACTTGANAAATAATCATCGTCTCAAGACAACATTAACGAATGAATTTGTTGAAAACTAAG 687
consensus_10297#1      AA---------------------------------------------------------- 600
consensus_10297#5      ------------------------------------------------------------
consensus_10297#4      ------------------------------------------------------------
consensus_10297#3      ------------------------------------------------------------
consensus_10297#2      ------------------------------------------------------------
                                                                                   

consensus_10297#0      GTGCACCAAACAG 700
consensus_10297#1      -------------
consensus_10297#5      -------------
consensus_10297#4      -------------
consensus_10297#3      -------------
consensus_10297#2      -------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)