These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 924 fasta sequence [AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA-AATG-A-AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTATATTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAANNNNNAAAAAAAAAAAAAAA] [+] EMBL CD081802 [AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTNCAGAAGAGTTAGAACATCCATGAACATACANNATG A AACTTGGTTCTACAGTGTGGCTNTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAANTGTAT ] [+] EMBL CD081710 [gaGCCTTTAATTCGGCACGA CGATTACAAATATATTATTTATTGTTTACTAATGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATG ANAACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTAT ] [-] EMBL CD075533 [ TGATTTTTAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCCTCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTGGGTACTTGTAAATGTAaa ] [-] EMBL CD097862 [ ATTTAG ATATGCTCGATAGACCATTATGAAATTGCACTTTCTTTGACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACGCGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCAT ] [-] EMBL CD133210 [ TCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTCTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGG ] [-] EMBL AI394799 [ GATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTAATATGTCGACCTATTTGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATTTCGCAGTGTTTTAAATTACTACTGGGGTTTTGTTGAAGATGAAGATGCTTTCGATATGGGGAAAGCACTTTCAGCAGATGTGCTTAAACGATTTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AAATTGGTTTTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTTTAAGTACTTGTAAATGTTTTTTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAANNNNNAAAAAAAAAAAAAAA] [-] EMBL AI395203 [ CGAACGG AACGAT TTACTATGTGGA CTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATGAA AACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTACTTGTAAATGTATCTTTTGTAACAAAAAAAAAAAAAAAAA ] [+] EMBL CD198410 [ TAAATAGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTCGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATACA AATG A AA ] consensusID : consensus_10300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 562 fasta sequence [GTGCCTGCTCCAAGACACATACTT-TTGTAATT-GGATC-GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA] [+] EMBL CD147999 [GTGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAA ] [+] EMBL CD187447 [GTGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGAT ] [-] EMBL CD186891 [ TGCCTGCTCCAAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATA ] [+] EMBL AI977659 [ AAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA] [+] EMBL AI977130 [ AAGACACATACTT TTGTAATT GGATC GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGATTACTTGCTTAGACTTGTTGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTGCATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGTTTTGAAAGGAATTCGACACGTCTTTCGGATATTTCACACACAGGTGATGCACAAAACCCATTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCGAAGTCCGAAGGTCATGTAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCCGAATATCGTCGTTTGAGAg ] [+] EMBL CD148994 [ GACACATACTTATTGTAATTCGTAGCGGGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGATGAAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATATTCTCCGATTTTATCTGCATTA ] consensusID : consensus_10300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [ATATATGGTATTGTGATGGGTGGGGGGTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC] [-] EMBL BG931003 [ATATATGGTATTGTGATGGGTGGGGGGTCCCGAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAACGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGATATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCTGTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGATCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10300#0 AGGCCATTAATTCGGCACGAGGGATTACAAATATATTATTTATTGTTTACTAATGATTTT 60 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 ------------------------------------------------------------ consensus_10300#0 TAATATGTACTTCGTGTCCAGTAGGTGGTAAGCAAACGAACTATGAATACTAGTTTTTCC 120 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 -----------------------GTGCCTGCTCCAAGACACATACTTTTGTAATTGGATC 37 consensus_10300#0 TCTAAGTTTTAGATTATTTAGAATATGCTCGATAGACCATTATGAAATTGTACTTTCTTT 180 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 GGAGAGAAAATTGACTGCATTATGGTAACCGTGAGGCCGTTTACTTGCTTAGACTTGTTG 97 consensus_10300#0 GACTTGGTGGTACTGTTACACTGTTAATGGCAATAAAAGTATAGTATCGGATTTTATCTG 240 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 AAGTTTGGAAATATTAATCTGGATATATATACGGAAACTTATAGTATCGGATTTTATCTG 157 consensus_10300#0 CATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGT 300 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 CATTATTTGGCAAAATGGCCAGAGTATATGCGAGTCCTAGAGTCACCCACACTAACCTGT 217 consensus_10300#0 TTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCA 360 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 TTTGAAAGGAATTCGACACGTCTTTCGGATATTCCACACACAGGTGATGCACAAAACCCA 277 consensus_10300#0 TTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCG 420 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 TTTCCCAAGATCATATCAATACCATCTACGTGTCAACGACTAATGGGCTACATGATGGCG 337 consensus_10300#0 AAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCC 480 consensus_10300#2 ------------------------ATATATGGTATTGTGATGGG-----TGGGGGGTCCC 31 consensus_10300#1 AAGTCGGAAGGTCATGGAGTGGACTGGCATGGTCATGTCACAGCGCTGTCAGTGGCTCCC 397 ***** *** * * * ** **** consensus_10300#0 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 540 consensus_10300#2 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 91 consensus_10300#1 GAATATCGTCGTTTGAGATTAGCTACTCAACTAATGTTAGAGTTAGAAGAAACTTCCGAA 457 ************************************************************ consensus_10300#0 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGAT 600 consensus_10300#2 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCAAACAAACTGGGCATAGAT 151 consensus_10300#1 CGGAAACGATGTTACTATGTCGACCTATTCGTACGTGCATCANACANACTGGGCATAGAT 517 ****************************************** *** ************* consensus_10300#0 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCT 660 consensus_10300#2 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAATTACTACTGGGGTTCT 211 consensus_10300#1 ATTTATAGTAAATTGGGGTATATTATATATCGCAGAGTCTTAAAA--------------- 562 ******************************************** consensus_10300#0 GTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGA 720 consensus_10300#2 GTTGAAGATGAAGATGCTTTCGATATGAGGAAAGCACTTTCAGCAGATGTGCTTAAACGA 271 consensus_10300#1 ------------------------------------------------------------ consensus_10300#0 TCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAGTTAGAACATCCATGAACATAC 780 consensus_10300#2 TCTGTTATACCAATGACGAGGCCGATACGTCCAGAAGAC--------------------- 310 consensus_10300#1 ------------------------------------------------------------ consensus_10300#0 AAATGAAACTTGGTTCTACAGTGTGGCTTTATATGTAACGTTAATCAGTGGTTCTAAGTA 840 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 ------------------------------------------------------------ consensus_10300#0 CTTGTAAATGTATATTTTGTAACCAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAA 900 consensus_10300#2 ------------------------------------------------------------ consensus_10300#1 ------------------------------------------------------------ consensus_10300#0 AAAANNNNNAAAAAAAAAAAAAAA 924 consensus_10300#2 ------------------------ consensus_10300#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||