These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [CCTCCGAGCCAANAATTCGGCACGAGGCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGACATATCAATTAGTGTGTGTATCTCCAAGCAAATGCACGTTTAATTNTTTTTGCGTGTAATTAAACCATAT] [+] EMBL CD082689 [CCTCCGAGCCAANAATTCGGCACGAGGCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGACATATCAATTAGTGTGTGTATCTCCAAGCAAATGCACGTTTAATTNTTTTTGCGTGTAATTAAACCATAT] [+] EMBL AI976898 [ TAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCATACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGACATATCAAATAGTGTGTGTATCTCCAAGCA ] consensusID : consensus_10301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 551 fasta sequence [CGTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGACATATCAATTAGTG] [+] EMBL CD111442 [CGTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCCATGTCTGAATGTGAT ] [-] EMBL CD111507 [ GTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATAT ] [-] EMBL CD111488 [ GTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATAT ] [-] EMBL CD111268 [ GTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCCGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGAC TTATCTTTGCTCATAT ] [-] EMBL CD111587 [ GTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGAC TTATCTTTGCTCATA ] [+] EMBL CD193341 [ CGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCC ] [+] EMBL CD077716 [ GATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTA ] [+] EMBL CD155884 [ ATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTT ] [+] EMBL CD121014 [ TAGTTGCGTTACGATGCCTCCTAGGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCATGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAACCTAGTGAATTCTCANATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGACATATCAATTAGTG] [-] EMBL CD111515 [ TAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATG ] [+] EMBL AI975080 [ GTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTCCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTCTTCG CAATGTCTGAATGTGATGGTACTGTAACCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTNTTTCGTTATTGATTGGTCGGACATATC ] [-] EMBL CD111508 [ CCTAAGTCGACTGCTTCTAAGAGCGAACACAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGAGTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGTTTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGAAAGTGCTTATGCGGACTTTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACTTCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATG ] consensusID : consensus_10301#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTGATATTTCTTAAAGAACTCCTTGAAAATTAGTGCACAAGACTGGTTTTCGATTGAGGCTTTTGTACTCACTGGTTTGTGTTCGCTCTTANAAGCAGTCGACTTATGAGGCATCGTGACGCAACTATCGAATTAC] [+] EMBL CD162844 [TAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCTTGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTTTCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTGATATTTCTTAAAGAACTCCTTGAAAATTAGTGCACAAGACTGGTTTTCGATTGAGGCTTTTGTACTCACTGGTTTGTGTTCGCTCTTANAAGCAGTCGACTTATGAGGCATCGTGACGCAACTATCGAATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10301#0 CCTCCGAGCCAANAATT-CGGCACGAGGCCT---AAGTCGACTGCTTCTAAGAGCGAACA 56 consensus_10301#1 --CGTAATTCGATAGTTGCGTTACGATGCCTCCTAAGTCGACTGCTTCTAAGAGCGAACA 58 consensus_10301#2 ------------------------------------------------------------ consensus_10301#0 CAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGA 116 consensus_10301#1 CAAACCAGTGAGTACAAAAGCCTCAATCGAAAACCAGTCTTGTGCACTAATTTTCAAGGA 118 consensus_10301#2 ------------------------------------------------------------ consensus_10301#0 GTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCT 176 consensus_10301#1 GTTCTTTAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCT 178 consensus_10301#2 ------TAAGAAATATCAAGCAACGACACCCAAGCGATTACGTATTTTGGATGTATACCT 54 ****************************************************** consensus_10301#0 TGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTT 236 consensus_10301#1 TGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTT 238 consensus_10301#2 TGTGTATATATTTCTAACTGGAGTTATTCAGTTCGTGTACTGCTGCCTAGCTGGGACTTT 114 ************************************************************ consensus_10301#0 TCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGT 296 consensus_10301#1 TCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTCGTTCGTTCTGGCCGT 298 consensus_10301#2 TCCATTCAATGCTTTCCTATCTGGATTTATATCTTGCGTTGCTTGATATTTCTTAAAGAA 174 ******************************************** * * * consensus_10301#0 TTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGA 356 consensus_10301#1 TTGTCTAAGGATGCACGCAAACCCTCAAAACAAGAACGTATTTGTCCCTTTCTGTCCTGA 358 consensus_10301#2 CTCCTTGAAAATTAGTGCA------CAAGACTGGTTTTCGATTGAGGCTTT-TGTACTCA 227 * * * ** *** *** ** * *** **** *** ** * consensus_10301#0 AAGTGCTTATGCGGACT-TTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACT 415 consensus_10301#1 AAGTGCTTATGCGGACT-TTATCTTTGCTCATATTATTTTACACCTCGTTGTTTTTAACT 417 consensus_10301#2 CTG-GTTTGTGTTCGCTCTTANAAGCAGTCGACTTATGAGGCATCGTGACGC----AACT 282 * * ** ** ** *** ** **** ** * * * **** consensus_10301#0 TCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAA 475 consensus_10301#1 TCATTGGGTAAACGTGTTATAATTGTTTCTCGTCAATGTCTGAATGTGATGGTACTGTAA 477 consensus_10301#2 --ATCGAATTAC------------------------------------------------ 292 ** * * * consensus_10301#0 CCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGA 535 consensus_10301#1 CCTAGTGGATTCTCAAATTAACTTGTTTGTAAATTGCTTTTTCGTTATTGATTGGTCGGA 537 consensus_10301#2 ------------------------------------------------------------ consensus_10301#0 CATATCAATTAGTGTGTGTATCTCCAAGCAAATGCACGTTTAATTNTTTTTGCGTGTAAT 595 consensus_10301#1 CATATCAATTAGTG---------------------------------------------- 551 consensus_10301#2 ------------------------------------------------------------ consensus_10301#0 TAAACCATAT 605 consensus_10301#1 ---------- consensus_10301#2 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||