These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 834 fasta sequence [GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA-AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG-CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA] [-] EMBL CD121554 [GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGT ] [+] EMBL CD200143 [ CATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATA ] [+] EMBL AI067868 [ CTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA] [+] EMBL AI068134 [ CACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAACAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAAT ] [-] EMBL CD190211 [ GGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCGTCTCATGTCTCCGCA ] [+] EMBL CD148509 [ GAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAGCTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGCCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAAATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTAGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTcg ] [+] EMBL CD071554 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAA ] [+] EMBL CD071629 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTAAACATACAA ] [+] EMBL CD071749 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGT ] [+] EMBL CD071738 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATG ] [+] EMBL CD071740 [ GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTNTATC ] [-] EMBL CD119959 [ AACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAG ] [-] EMBL CD200795 [ AATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTTGAGTGATCATGAAGTTTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAGAGTGGTACAGAAGAC AGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCT ] consensusID : consensus_10303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT-ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA-CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG] [-] EMBL CD201020 [CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG] [-] EMBL CD200888 [ aaTAAAGAGGAGCCGGGTCAAATAACAAATCTAGGTACTGGTCAGAATGGAAGGCCCCGTGAAGGTAATTAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATTTTCTCATGTCACCGCAAGGTACGGTAGACACCATATATCTTCNCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAATCTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCCAATATGGTCCTATCTATTAAACTTTGAGTCGCCTTTTGTGTGGGGGCTCTCCAATTCAAAATTGGTGTGGTATGATTCGGACCCGCCACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGGTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10303#0 GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATT 60 consensus_10303#1 ------------------------------------------------------------ consensus_10303#0 TCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCG 120 consensus_10303#1 ------------------------------------------------------------ consensus_10303#0 ACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAG 180 consensus_10303#1 ----------------------------CCAGTAAAGAGGAGACTGCTCAAA--TACNAA 30 ** ** ** ** * * * * * consensus_10303#0 AGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCA 240 consensus_10303#1 ATCAAGTTACTGGTCAGATTGGATGG--CGCCGTGAAGGTATAAAATACAGAAGGAATGA 88 * *** **** * * * * ** *** * * ** * * * consensus_10303#0 GCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAA 300 consensus_10303#1 ACTGTTTCTGGATATCATGGAGTCGGTCAA----TCTTCTCATGTCACCGCAAGGTACCG 144 ***** * * * * ** * * * ** * * * * ** * * consensus_10303#0 TATAAAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATA 360 consensus_10303#1 TAGACACCATA-TTTCTTCCCCGTTTA------TTTTG------TGCTTTAGTCTAGAAA 191 ** * * *** *** ** * ** * *** ** ** * * * ** * consensus_10303#0 TGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCAC 420 consensus_10303#1 ---AAAATATGTTGATAACAAAAAACTAAAACCTGTT-TTTTTCATGGTCTGTCGTTTAT 247 * * * **** ** ***** * ** ** *** * * * * * consensus_10303#0 TGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCG 480 consensus_10303#1 TTC--GTAAA----AGCTTGC--AGATAGTGACTCTGACATCTGATAGGATTA-ACATCT 298 * * ***** ** *** * *** * ** *** * **** * * consensus_10303#0 CCGTGAAGGTATAAAATACAGAAGGAATGA--ACTGTTTCTGGATAT-CATGGAGTCGGT 537 consensus_10303#1 TCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGA 358 * * * * *** ** *** ** ** * * ** * * * consensus_10303#0 CAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCAC---ATGTGGCAGGTCGAGT 594 consensus_10303#1 GAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGT 418 ** ** ** * *** * ** ** ** * * * * *** * * *** consensus_10303#0 -GATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAG 653 consensus_10303#1 TGACTACCTAACATGAATAACCAAATATGGTCCTATCTA--TTAAACTTTGA-GTCGCAT 475 ** * * * * * * **** ** ** ** *** * * * * consensus_10303#0 TCAGTTTGGAAAATAAACAACGATCTACAGCTGGTACAGAAGACAGTAGTGGAGGTATTG 713 consensus_10303#1 TTTGTGTGGGGGCT---CTCCAATTCAAAGTTGGTGTGGTATG-ATTCGTACCTGCAACC 531 * ** *** * * * ** * ** **** * * * * ** * * consensus_10303#0 CAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATA 773 consensus_10303#1 TAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCT---TCAGCTCCACAG-------- 580 *** * ** *** * ** ***** * ** ** * * consensus_10303#0 CAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGG 833 consensus_10303#1 ------------------------------------------------------------ consensus_10303#0 A 834 consensus_10303#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||