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Schistosoma mansoni
cluster # 10303 cluster # 10303       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10303#0 length = 834 sequences # 13  
consensus_10303#1 length = 580 sequences # 2  

consensusID : consensus_10303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 834
fasta sequence
                              [GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA-AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG-CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA]

[-] EMBL CD121554             [GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATTTCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCGACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGT                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD200143             [                                                                                                                                                CATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAGAGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCAGCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATA                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI067868             [                                                                                                                                                                                                                                                 CTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAA AAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA]
[+] EMBL AI068134             [                                                                                                                                                                                                                                                       CACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAATATAACAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAAT                                                                                                                                                                                                        ]
[-] EMBL CD190211             [                                                                                                                                                                                                                                                                                                                                                                    GGATATGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCGTCTCATGTCTCCGCA                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD148509             [                                                                                                                                                                                                                                                                                                                                                                                             GAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCACTGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAGCTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGCCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAAATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTAGAAACTGAACATACAATCTCTTTTATCCCACCCGACGGTcg                                 ]
[+] EMBL CD071554             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAA                                                          ]
[+] EMBL CD071629             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTAAACATACAA                                                          ]
[+] EMBL CD071749             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGT                                                                                                                                                                                                                                                 ]
[+] EMBL CD071738             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATG                                                                                                                                                                                                                                                              ]
[+] EMBL CD071740             [                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTNTATC                                                                                                                                                                                                                                                                      ]
[-] EMBL CD119959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                AACAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAG CTGGTACAG                                                                                                                                              ]
[-] EMBL CD200795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTTGAGTGATCATGAAGTTTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTTGGAAAATAAACAACGATCTACAGAGTGGTACAGAAGAC   AGTGGAGGTATTGCAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCT                                                       ]


>consensus_10303#0 GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATT TCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCG ACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAG AGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCA GCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAA TATAAAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATA TGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCAC TGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCG CCGTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAA TCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCACATGTGGCAGGTCGAGTGATCAT GAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAGTCAGTTT GGAAAATAAACAACGATCTACAGCTGGTACAGAAGACAGTAGTGGAGGTATTGCAATAGA TGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATACAATCTC TTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGGA



consensusID : consensus_10303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence
                              [CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT-ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA-CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG]

[-] EMBL CD201020             [CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCCGTGAAGGT ATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATCTTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAA CTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGTGTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG]
[-] EMBL CD200888             [  aaTAAAGAGGAGCCGGGTCAAATAACAAATCTAGGTACTGGTCAGAATGGAAGGCCCCGTGAAGGTAATTAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATTTTCTCATGTCACCGCAAGGTACGGTAGACACCATATATCTTCNCCGTTTATTTTGTGCTTTAGTCTAGAAAAAAATATGTTGATAACAAAAAATCTAAAACCTGTTTTTTTCATGGTCTGTCGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTGACTACCTAACATGAATAACCCAATATGGTCCTATCTATTAAACTTTGAGTCGCCTTTTGTGTGGGGGCTCTCCAATTCAAAATTGGTGTGGTATGATTCGGACCCGCCACCTAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCTTCAGGTCCA   ]


>consensus_10303#1 CCAGTAAAGAGGAGACTGCTCAAATACNAAATCAAGTTACTGGTCAGATTGGATGGCGCC GTGAAGGTATAAAATACAGAAGGAATGAACTGTTTCTGGATATCATGGAGTCGGTCAATC TTCTCATGTCACCGCAAGGTACCGTAGACACCATATTTCTTCCCCGTTTATTTTGTGCTT TAGTCTAGAAAAAAATATGTTGATAACAAAAAACTAAAACCTGTTTTTTTCATGGTCTGT CGTTTATTTCGTAAAAGCTTGCAGATAGTGACTCTGACATCTGATAGGATTAACATCTTC CCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGAGA AACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGTTG ACTACCTAACATGAATAACCAAATATGGTCCTATCTATTAAACTTTGAGTCGCATTTTGT GTGGGGGCTCTCCAATTCAAAGTTGGTGTGGTATGATTCGTACCTGCAACCTAATGATCA AAAGTTGATTCCTCTAAACTGTTATCCTTCAGCTCCACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10303#0      GATAATAGTTGGAATATTAATCTATATCCACAAAGGGGAAGTTTTAATATCAAGAATATT 60
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TCGCGACGATGTCTCAAGAAATGCTGCGGACGCTTTTCGAGTCAATGTTATTCACGCGCG 120
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      ACAACAGGTTCGCTCACCCATAAGCATAGTAGCAAGGACAAGCTTCTTTCATGTCAAAAG 180
consensus_10303#1      ----------------------------CCAGTAAAGAGGAGACTGCTCAAA--TACNAA 30
                                                     ** ** **  **  *  *  *    *  * 

consensus_10303#0      AGCAAACATCTGGATATGTGCTGTTGCTCGTCGTAACGTTAATGCTGCTATGGTCTTTCA 240
consensus_10303#1      ATCAAGTTACTGGTCAGATTGGATGG--CGCCGTGAAGGTATAAAATACAGAAGGAATGA 88
                       * ***    ****  *  *    * *  ** *** * * **        *       * *

consensus_10303#0      GCTGTTGCACGCTCTTCTGAACCTGATGAAGGATTACTTTGGTAGAGTTACAGAGGAAAA 300
consensus_10303#1      ACTGTTTCTGGATATCATGGAGTCGGTCAA----TCTTCTCATGTCACCGCAAGGTACCG 144
                        ***** *  * * *  ** *   * * **    *  * *  *       **  * *   

consensus_10303#0      TATAAAAAATAACTTCGTCTTAATATACGAAATTCTTGATGAGGTGATTGATTATGGATA 360
consensus_10303#1      TAGACACCATA-TTTCTTCCCCGTTTA------TTTTG------TGCTTTAGTCTAGAAA 191
                       ** * *  ***  *** **    * **      * ***      ** ** * * * ** *

consensus_10303#0      TGGACAGAACACAGATACAGGAATTTTAAAATCCCTTATTACTCAGGCTGGGACACGCAC 420
consensus_10303#1      ---AAAATATGTTGATAACAAAAAACTAAAACCTGTT-TTTTTCATGGTCTGTCGTTTAT 247
                          * *  *    ****    **   ***** *  ** **  *** * *  * *    * 

consensus_10303#0      TGCCAGTAAAGAGGAGACTGCTCAAATAACAAATCAAGTTACTGGTCAGATTGGATGGCG 480
consensus_10303#1      TTC--GTAAA----AGCTTGC--AGATAGTGACTCTGACATCTGATAGGATTA-ACATCT 298
                       * *  *****    **  ***  * ***   * **      *** *  ****  *   * 

consensus_10303#0      CCGTGAAGGTATAAAATACAGAAGGAATGA--ACTGTTTCTGGATAT-CATGGAGTCGGT 537
consensus_10303#1      TCCCGTCCCAACAGGCTACGAAAATTCTGATTGCTAACACTTGTTTCACAAGAAAAAAGA 358
                        *  *     * *   ***  **    ***   **    ** * *   ** * *    * 

consensus_10303#0      CAATCTTCTCATGTCACCGCAAGGACAAGTTTTATCTGCAC---ATGTGGCAGGTCGAGT 594
consensus_10303#1      GAAACTGGTCTCATGGACGCGTTGTAAACCTTCATTTTCCCGGAAAGTGACCAAACTAGT 418
                        ** **  **   *   ***   *  **  ** ** * * *   * *** *    * ***

consensus_10303#0      -GATCATGAAGTCTTACTTAAGTGGTATGCCAGAATGTAAATTTGGTTTTAATGACAAAG 653
consensus_10303#1      TGACTACCTAACATGAATAACCAAATATGGTCCTATCTA--TTAAACTTTGA-GTCGCAT 475
                        **  *   *   * * * *     ****     ** **  **    *** * * *  * 

consensus_10303#0      TCAGTTTGGAAAATAAACAACGATCTACAGCTGGTACAGAAGACAGTAGTGGAGGTATTG 713
consensus_10303#1      TTTGTGTGGGGGCT---CTCCAATTCAAAGTTGGTGTGGTATG-ATTCGTACCTGCAACC 531
                       *  ** ***    *   *  * **  * ** ****   * *   * * **    * *   

consensus_10303#0      CAATAGATGACTGTCAATTTCATCAATGTGTTAAATTGGGTCGATTCGAAACTGAACATA 773
consensus_10303#1      TAATGATCAAAAGTTGATTCCTCTAAACTGTTATCCT---TCAGCTCCACAG-------- 580
                        ***     *  **  *** *   **  *****   *   **   ** * *         

consensus_10303#0      CAATCTCTTTTATCCCACCCGACGGTGAATTCGAGTTGATGCGTTATAGAACTACTAAGG 833
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      A 834
consensus_10303#1      -
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)