cluster # 10325

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Schistosoma mansoni
cluster # 10325 cluster # 10325 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10325#0 length = 417 sequences # 14

consensus_10325#1 length = 243 sequences # 1

consensusID : consensus_10325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 417
fasta sequence

                              [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGACCCCCAATC]

[+] EMBL BG931248             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGACCCCCAATC]
[+] EMBL BG931237             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGACCCC     ]
[+] EMBL BG931252             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGA         ]
[+] EMBL BG931247             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGA         ]
[+] EMBL BG931250             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGA         ]
[+] EMBL BG931251             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGn         ]
[+] EMBL BG931256             [CTCGTATACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTCTTGTATTGTCAGTGCTTGTAATGTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGC                        ]
[+] EMBL BG931258             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTTAGGCTCGGTGACGATGGTGCT                          ]
[+] EMBL BG931255             [CTCGTATACAGTATCTTGACTAAGTAGAAATGCATACCTCTTGTATTGTATGTGCAGTGCTTGTAATATATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTATGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATGAAGGCTCGGTGACGATGGT                             ]
[+] EMBL BG931217             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTATATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTATATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTGACAGAACTCTGACCATCTCGATCCAAATCCTCATCGAAATACCGACCTATATTAAGGCTCGGTGACGATGG                              ]
[+] EMBL BG931225             [CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTGTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGAT                                ]
[+] EMBL BG931236             [CTCGTTAACAGTATTTTGACTAAGTAGAAATACATACCTCTTTGTTTGTATTTGCAGTGCTTGTAATTGATCATAAACGTGATATGACTTGCAACGCCTTGTGAAATTAATGCCAGCTACTTCTTGAAAAGGAACTAGATTCAATGACGATGTACATGATTCTTTGGAAACTTTACTACCATCTGAAGCCAATAATTTATGTATAATTTGAGCTCCTGGAGAACCTAA                                                                                                                                                                                             ]
[+] EMBL BG931254             [ TCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGA         ]
[+] EMBL BG931253             [     atACAGTATTTTGACTAAGTAGAAATGCATACCTCTTGTATTGTATGTGCAGTGCTTGTAATTTATCATATACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTACTTCTTGAGAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACCATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAACAACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGCTGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCGACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGATAATGGA         ]




>consensus_10325#0
CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGC
TTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTAC
TTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACC
ATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAAC
AACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGC
TGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCG
ACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGACCCCCAATC

consensusID : consensus_10325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [CTCGTAGACAGTATTCTGACTAAGTAGAAATGCATACCTCTTTTTATGTATATGCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGGTAATTCTTGAAAAGGAACTATATTGAATGACAATGTACATGATTCTCGGGAAACTTCAGTACCATCTGAAGCCAATAAATTAAGTATAATCTGAGCTCCTGGAGAAGCTATATAAGATCAAACTAC]

[+] EMBL BG931209             [CTCGTAGACAGTATTCTGACTAAGTAGAAATGCATACCTCTTTTTATGTATATGCAGTGCTTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGGTAATTCTTGAAAAGGAACTATATTGAATGACAATGTACATGATTCTCGGGAAACTTCAGTACCATCTGAAGCCAATAAATTAAGTATAATCTGAGCTCCTGGAGAAGCTATATAAGATCAAACTAC]




>consensus_10325#1
CTCGTAGACAGTATTCTGACTAAGTAGAAATGCATACCTCTTTTTATGTATATGCAGTGC
TTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGGTAA
TTCTTGAAAAGGAACTATATTGAATGACAATGTACATGATTCTCGGGAAACTTCAGTACC
ATCTGAAGCCAATAAATTAAGTATAATCTGAGCTCCTGGAGAAGCTATATAAGATCAAAC
TAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10325#0      CTCGTAAACAGTATTTTGACTAAGTAGAAATTCATACCTCTTTTTTTGTATTTTCAGTGC 60
consensus_10325#1      CTCGTAGACAGTATTCTGACTAAGTAGAAATGCATACCTCTTTTTATGTATATGCAGTGC 60
                       ****** ******** *************** ************* ***** * ******

consensus_10325#0      TTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGCTAC 120
consensus_10325#1      TTGTAATTTATCATAAACGTGAGATGACTTGCAACGCCTTGTGAAATTAGTGCCAGGTAA 120
                       ******************************************************** ** 

consensus_10325#0      TTCTTGAAAAGGAACTAGATTTAATGACAATGTACATGATTCTTTGGAAACTTTAATACC 180
consensus_10325#1      TTCTTGAAAAGGAACTATATTGAATGACAATGTACATGATTCTCGGGAAACTTCAGTACC 180
                       ***************** *** *********************  ******** * ****

consensus_10325#0      ATCTGAAGCCAATAAATTAAGTATAATTTGAGCTCCTGGAGAACCTAAATAAGAACAAAC 240
consensus_10325#1      ATCTGAAGCCAATAAATTAAGTATAATCTGAGCTCCTGGAGAAGCTATATAAGATCAAAC 240
                       *************************** *************** *** ****** *****

consensus_10325#0      AACATTTAGATCACCTGTTTGTTCCTCAATTTTGAAACATGGTCTTGGGAAACTGCTAGC 300
consensus_10325#1      TAC--------------------------------------------------------- 243
                        **                                                         

consensus_10325#0      TGCTATATGAATTGTAACAGAACTCTGACCATCTCGATCCAAATCCTCAGCGAAATACCG 360
consensus_10325#1      ------------------------------------------------------------
                                                                                   

consensus_10325#0      ACCTATATTAAGGCTCGGTGACGATGGTGCTGCCTTTAAGAAAATGGACCCCCAATC 417
consensus_10325#1      ---------------------------------------------------------