These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCCCTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTATTTTCGTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTC] [+] EMBL AI976737 [GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCCCTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTATTTTCGTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTC] consensusID : consensus_10329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT] [+] EMBL CD083439 [ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT] consensusID : consensus_10329#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 480 fasta sequence [AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGA--GTCCCTGCACATACATT-GTGAT-CC-GGAAAAAAC-AATAATTATTCACGAAGCTCAC-TTCGG-TTAT-TTTCGTG-AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA-TATGACTGCATTCCAAC-AACTCTT-GTAACACGAATATCT-AATGAAAATCA-TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA] [-] EMBL CD181668 [AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGA GTCCCTGCACATACA T GTGATNCC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AGGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTct] [-] EMBL CD181638 [ AATTGTCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGCTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ] [+] EMBL CD181666 [ GTCAAGTTATAACGA GTCCCTGCACATACATTGGTGAT CCGGGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATT CAACAAACTC T GT ACACGAATATCT AATG AAATCA TGTGGATCCTG ACAGATgg ] [-] EMBL CD181628 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA] [-] EMBL CD181709 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ] [-] EMBL CD181210 [ TCATG TAT ACGANGGTCCCTGCACATACATG NTGAT CC GGAAANAAC AATAATTACTCACGAAGCTCAC TCGGTTTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTTCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ] [-] EMBL CD181462 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGCT CC GGAAAAAAC AAT AGTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATATCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ] [+] EMBL CD181282 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCATGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAN CACTCTTNGT ACACGAATATCTAAATG AAATCANTGTGGAT CTGAACAGATNGG ] [-] EMBL CD181406 [ CATG TATAACGA GTCCCTGCACATACATN GTGAT NC GGAANAANC AATAATTATTCACGAAGCTCAC TTCGG TTA TTTCGTGAAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA ATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ] [-] EMBL CD181658 [ CATG TATANCGA GTCCCTGCACATACA T GTGAT C GGAAAAAACAAATAATATTTCACGAAGCTCAC TTCGG TATNNTTCGTG AAGTTCTACTATTTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA] [-] EMBL CD181237 [ CATGTTAT ACGAG GTCCCTGCACATACA T GTGAT CCNGGAAAAAAC AAT ATTATTCACG AGCTCACTTTCNG GTA TTTCGTGAAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGCTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAANAATGACgg ] [-] EMBL CD139872 [ AGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACCGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATCTAAT ] consensusID : consensus_10329#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TGCAAACATTATCAAAGGAATCGGAATACCTACAGCACAGAATAGTTTACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCACATTCTATGAAGTGTTACTAAGTAACAAGTTGAAAATAATAGCTGTAGATACAAAAACTCGAGAAAGTCCTCTAAATATCTCACAGTAAGTTAAGAGAGCAAAATGATAGGGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCTGCAACCTTCCAACCGATGAATTGG] [+] EMBL CD195828 [TGCAAACATTATCAAAGGAATCGGAATACCTACAGCACAGAATAGTTTACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCACATTCTATGAAGTGTTACTAAGTAACAAGTTGAAAATAATAGCTGTAGATACAAAAACTCGAGAAAGTCCTCTAAATATCTCACAGTAAGTTAAGAGAGCAAAATGATAGGGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCTGCAACCTTCCAACCGATGAATTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10329#0 GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGG 60 consensus_10329#1 ------------------------------------------------------------ consensus_10329#2 -------------AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGG 47 consensus_10329#3 ------------------------------------------------------------ consensus_10329#0 ATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCC 120 consensus_10329#1 ------------------------------------------------------------ consensus_10329#2 ATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCC 107 consensus_10329#3 -----TGCAAACATTATCAAAG--------GAATCGGAATACCTACAGCACAGAATAGTT 47 consensus_10329#0 CTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTAT 180 consensus_10329#1 ------------------------------------------------------------ consensus_10329#2 CTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTAT 167 consensus_10329#3 TACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCAC 107 consensus_10329#0 TTTC-GTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAA-TTCTC 238 consensus_10329#1 ---------------ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACA--TTCTC 43 consensus_10329#2 TTTC-GTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAA-TTCTC 225 consensus_10329#3 ATTCTATGAAGTGTTACTAAGTAACAAGTTGAA-AATAATAGCTGTAGATACAAAAACTC 166 * * * *** * ** * *** *** consensus_10329#0 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 298 consensus_10329#1 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 103 consensus_10329#2 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 285 consensus_10329#3 GAGAAAGTCCTCTAAATAT--CTCACAGTAAGTTAAGAGAGCAAAATGATAG-------- 216 **** ** * ** * ** ** ** * *** * * consensus_10329#0 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 357 consensus_10329#1 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 162 consensus_10329#2 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 344 consensus_10329#3 GGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCT 276 * **** *** ** * ** ** ** ** ** * * ** * * * consensus_10329#0 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 415 consensus_10329#1 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 220 consensus_10329#2 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 402 consensus_10329#3 GCAACCTTCCAACCGATGAATTGG------------------------------------ 300 * * ** ** ** ** consensus_10329#0 CAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCAT 475 consensus_10329#1 CAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCAT 280 consensus_10329#2 CAACAACTCTTGTAACACGAATATCTAAT------GAAAATCATGTGGAT-CCTGAACAG 455 consensus_10329#3 ------------------------------------------------------------ consensus_10329#0 ATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTG 535 consensus_10329#1 ATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTG 340 consensus_10329#2 ATTGGCGGTTATTTAATCAGCTTGA----------------------------------- 480 consensus_10329#3 ------------------------------------------------------------ consensus_10329#0 TTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACAT 595 consensus_10329#1 TTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACAT 400 consensus_10329#2 ------------------------------------------------------------ consensus_10329#3 ------------------------------------------------------------ consensus_10329#0 CCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGA 655 consensus_10329#1 CCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGA 460 consensus_10329#2 ------------------------------------------------------------ consensus_10329#3 ------------------------------------------------------------ consensus_10329#0 CCAATTCATTC-------------------------- 666 consensus_10329#1 CCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT 497 consensus_10329#2 ------------------------------------- consensus_10329#3 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||