These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 849 fasta sequence [ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACAAATCGAAAATTGTTTGGATTGTA] [+] EMBL CD121260 [ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAACGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAAATGTAATGTTTGCAAAGAAAATGATTGAGTAAACA ] [+] EMBL CD121191 [ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTACGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTAAACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAGTGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGGTCACCATGAGACGCTCAATGATGTACANCATCTGTGCATGTTGAAGCACTCGAATGTANATG ] [-] EMBL CD121219 [ ACATTNTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACANAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCTTACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGTAAATGTTTGCAAAGAAAATGATTGAGTAAACAATGTACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAG ] [+] EMBL CD156908 [ ACACTGAATTATTTTATTTATTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCCTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAGCATAAAGCACGACTGACATAGAGATA ] [+] EMBL CD156954 [ ACACTGAATTATTTTATTTATTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGACAATCCGTTGAGTTAAGCATAAAGCACGACTGACATAGAGATA ] [-] EMBL CD159486 [ TTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACAAATCGAAAATTGTTTGGATTGTA] [+] EMBL CD119306 [ GAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT ] [+] EMBL CD119563 [ GAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT ] [-] EMBL CD119406 [ AGCGTTTCGAATGTTCACCATGAGACAAAAAATGAAGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATagacggt ] [-] EMBL CD114662 [ TCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGTACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAG ] consensusID : consensus_10410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 693 fasta sequence [TTGTGCCCACTCTAAGAGGATGATGACATCCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT] [+] EMBL CD091090 [TTGTGCCCACTCTAAGAGGATGATGACATCCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCC ] [+] EMBL CD091092 [ TGACATTCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTGATCCCCCCCCCTGTATCATATCCTTGCACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATCAATTCGGTG ] [-] EMBL CD091124 [ GTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGGGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCGCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCACTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT] [-] EMBL CD091086 [ CGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCGTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGTAACTACCTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAGCGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT] [-] EMBL CD091111 [ TGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGCAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT] [-] EMBL CD091112 [ ATATCCTTGGACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10410#0 --------ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTA 52 consensus_10410#1 TTGTGCCCACTC-TAAGAGGATGATGACATCCC-TTATAACCCTAAGAATCTACCCCTTG 58 *** * * * * ** * ** *** * ** *** ** consensus_10410#0 ACAGAAGAACGAAACATGATGAGC--ATTTCTGCAAACAA-GTAAAAATAAATAGAAAAA 109 consensus_10410#1 GATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGA 118 * **** * * ***** * **** * ** ** * consensus_10410#0 TTAAAATGCCATTGCATGATTGACATTTTTATTCGA-AACAGAAAGTAGGGTGCAGATGC 168 consensus_10410#1 CCAATAATCC-TTAC-TGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTA 176 ** * ** ** * *** * ** * * * ****** ** ** * consensus_10410#0 ATTCAAGCTATACTAATATGCT-ACAGTGACAGAGTAACAAAATGACATGCATCGAAATG 227 consensus_10410#1 ACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTA-- 234 * ** * * **** *** ** * * * *** ** * * consensus_10410#0 CTGATGTGTAACAGTGAAATGAGTGGTTGTGCT-CTATGAAACATCACTCACTATGAATA 286 consensus_10410#1 --GATGCAGACTACTTAGTTGAG-GTCCGCGTGACTATCGTA-ACCACTGGTTGGAGACT 290 **** * * * * **** * * * **** * * **** * * consensus_10410#0 ATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGAT 346 consensus_10410#1 TTGGGTGAC--ATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTT 348 ** * ** * * * * * * ** *** * ** * * consensus_10410#0 CACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAAC 406 consensus_10410#1 C-CCTTAAACCATGAGATT-----AAAGCTACTGTATACCTTTCTACGAACTAATCCCCC 402 * * * ** ** ** * * * * ** *** ** * * consensus_10410#0 ACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGA 466 consensus_10410#1 CCCCTGTATCATATCCTT------GTACA------CAATCTTTTATTTATTACGACCATT 450 * *** ** ** * ** * *** ** *** * *** * * * * consensus_10410#0 AAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATG 526 consensus_10410#1 GAAGTAACTACTTCTATGAATTCG---GTGTTCATCTTGTTGTGCTGATGAGGTGTGGCA 507 ** ** **** * **** * *** ****** * ** * consensus_10410#0 ATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATT 586 consensus_10410#1 ACTTG---GACCGGTGCATAT--AAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACT 562 * * * * ****** * *** * * * ** ** ** * * *** * consensus_10410#0 GAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT 646 consensus_10410#1 GAC------------------GTCGGGTTA--ATACATATAGTAACTTTCTCATGAA--- 599 ** *** ** ** * * ** ** * ** consensus_10410#0 AGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACA 706 consensus_10410#1 ------CGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAA-TGCTATTCTTT 652 ***** * * ** * * * * * ** *** * **** * * * consensus_10410#0 TAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATG 766 consensus_10410#1 GGTATACGAAAGTTTTATTTTTTTTATTTA----TTTGAACACAT--------------- 693 * * * ** * * * *** * * * ** *** * consensus_10410#0 GAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACA 826 consensus_10410#1 ------------------------------------------------------------ consensus_10410#0 AATCGAAAATTGTTTGGATTGTA 849 consensus_10410#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||