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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1098 fasta sequence
[TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGC-GACAT-TCAAAATAAG-AAACACT-GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA-ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC--ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAATGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAAATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTCTTTGCCAAATATAATCTCATA]
[+] EMBL CD144568 [TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGCGGACATGTCAAAATAAGTAAACACTCGAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCC ]
[-] EMBL CD144674 [ ACTATCCAAAATCCAAAGTGC GACAT TCAAAATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGC AAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCA ]
[-] EMBL CD144581 [ ACTATCCAAAATCCAAAGTGC GACAT TCAAAATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCTGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCA ]
[-] EMBL CD077928 [ GTGC GACA TCAACATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCA CCTCGGACCGAATTCTTGGCTGc ]
[+] EMBL CD093839 [ AAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAAGACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGACTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAATGTTAACACACATGAATTCAAAATA ]
[+] EMBL CD186793 [ TTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAAAGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGGCATTGTGTCCAAAATATAATCCCGACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGAATGTACTATGTTTGGCCAAAGGTATTCCT ]
[+] EMBL CD186911 [ TTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATTCCAGTGGAATAGAAGTTTTACc ]
[+] EMBL CD186947 [ TTGCGGCATTGTGT CAAAATAT ATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTGTGTGTCAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCA ]
[+] EMBL CD187070 [ TTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCTGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ]
[+] EMBL CD063636 [ AATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTTATCCA ]
[-] EMBL CD186919 [ CTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACATACTGTAACTGGCAAGTTA ]
[-] EMBL CD147421 [ ATTGTAGGTTCATCCTTTAAATCAGACGGGAGTATTAATGNCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACCGTAACTGGCAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAAATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTCTTTGCCAAATATAATCTCATA]
[+] EMBL CD187325 [ GTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ]
[+] EMBL CD187454 [ GTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAGAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ]
[-] EMBL CD132356 [ TCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACAATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTa ]
consensusID : consensus_10436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[TTACTCTGCTCGTTAATAAGTTGACTTCAAAGAAGTCGTTTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCAGTTTGTCCTCAGAGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGGAGAACGTCTATCACCATCGAGTTATGAGATTATATTTGGCAAAGAAGAGACATGTAAAGTTCTTTGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACTTACTCCACTTCGACAATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCTTCAGAGAACTCTAACTTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCAGCTTACCAAACAACAATTCGTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCATCGGGCGTGGGCTTCGATATTTGCGTGCATTTTGCTTGCTGGTGCACCAGGTACAGTTCCCGCAGCCATGACGCCATCACT]
[+] EMBL CD093216 [TTACTCTGCTCGTTAATAAGTTGACTTCAAAGAAGTCGTTTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCAGTTTGTCCTCAGAGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGGAGAACGTCTATCACCATCGAGTTATGAGATTATATTTGGCAAAGAAGAGACATGTAAAGTTCTTTGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACTTACTCCACTTCGACAATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCTTCAGAGAACTCTAACTTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCAGCTTACCAAACAACAATTCGTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCATCGGGCGTGGGCTTCGATATTTGCGTGCATTTTGCTTGCTGGTGCACCAGGTACAGTTCCCGCAGCCATGACGCCATCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10436#0 TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGC 60
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 GACATTCAAAATAAGAAACACTGAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATAT 120
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 AACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACC 180
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 CGAAGAAGCTCCTAAACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACCACGATT 240
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 GGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGAT 300
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 TTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATAC 360
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 ATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTC 420
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 TGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGA 480
consensus_10436#1 ----------------------------TTACTCTGCT---CGTTAATAAGTTGACTTCA 29
*** * * * * **** *** *
consensus_10436#0 AAGGAATAATGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGG 540
consensus_10436#1 AAGAAGTCGT-TTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCA-GTTTGTCCTCAG 87
*** * * * *** * * * * * * *** * *** * * *
consensus_10436#0 CATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAA 600
consensus_10436#1 AGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGG------AGAACGTCTATCAC 141
* * *** * **** * ** * ** *** * *** *
consensus_10436#0 TGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAA 660
consensus_10436#1 CATCGAGTTATG-----AGATTAT-----ATTTGGCAAAGAAGAGACATGTAAAGTTCTT 191
* * * * * **** ** * ** * * * * *
consensus_10436#0 TGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGC 720
consensus_10436#1 TGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACT-TACTCC--ACTTCGAC 248
** * *** ** * * * * * * **** * **** * * *
consensus_10436#0 AATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAAC 780
consensus_10436#1 AATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCT--------TCAGAGAACTCTAAC 300
*** ** * ** * *** *** ** * ** ****
consensus_10436#0 TGGAT--GATAGACAATGTGCAGACTGAC-ATGATTTAACAAGATTGTACTATGTTTGGC 837
consensus_10436#1 TTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCA-GCTTACC 359
* ** *** ** **** ** ** * ** * ** * * ** *
consensus_10436#0 CAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAG 897
consensus_10436#1 AAACAACAATTC--GTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCA 417
** * * * * ** * * *** * *** * * *
consensus_10436#0 TGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGG 957
consensus_10436#1 TCGGGCGTGGGCTT--CGATATTT------GCGTGCATTTTGCTTGCTGG-TGCACCAGG 468
* * * ** * ****** * * ** *** * ** * * **
consensus_10436#0 CAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAA 1017
consensus_10436#1 TACAGTTCCCGCAGCC--ATGACGC-CATCACT--------------------------- 498
* * ** * ** **** ** *** *
consensus_10436#0 ATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTC 1077
consensus_10436#1 ------------------------------------------------------------
consensus_10436#0 TTTGCCAAATATAATCTCATA 1098
consensus_10436#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||