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Schistosoma mansoni
cluster # 10469 cluster # 10469       Sequences # 16       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10469#0 length = 998 sequences # 11  
consensus_10469#1 length = 674 sequences # 2  
consensus_10469#2 length = 388 sequences # 1  
consensus_10469#3 length = 363 sequences # 1  
consensus_10469#4 length = 344 sequences # 1  

consensusID : consensus_10469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 998
fasta sequence
                              [GAGATATACCAGACTAGTAGTAGTAGCAGCAGCAAAAAGCCGAGAAAACACAATTAACGTGAGAAAAATTTATGGTGACATCTAGTGTCACACAAGGTGCGGAATCTGGAAATCGGCACATTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAGAAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACCGGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTATCATTGAATGCAAGTGAATAGCATATACCTGATGGGTTGTTTACTCGCTTTGCTTATGTTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTA-TTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTGCAGATACACGGTTTACGTGGAATANATCTCTGTTAAATGAATGGGAATCTATGCTTAATTCTACA]

[+] EMBL CD121265             [GAGATATACCAGACTAGTAGTAGTAGCAGCAGCAAAAAGCCGAGAAAACACAATTAACGTGAGAAAAATTTATGGTGACATCTAGTGTCACACAAGGTGCGGAATCTGGAAATCGGCACATTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAGAAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACCGGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTATCATTGAATGCAAGTGAACAGCATATACCTGATGGGTTGTTTACTCGCTTTGCTTATGTTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTA TTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD130879             [                                                                                                                   GCACATTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAGAAATGATAGTTCCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACCGGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTATCATTGAATGCAAGTGAATAGCATATACCTGATGGGTTGTTTACTCGCTTTGCTTATGTTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTA TTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD184475             [                                                                                                                   GCACATTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAGAAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACCGGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD153846             [                                                                                                                                   AGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAGAAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACCGGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTATCATTGAATGCAAGTGAATAGCATATACCTGATGGGTTGTTTACTCGCTTTGCTTATGTTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTA TTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGNGGCTTGTACGTCTAGTGTCGGNGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTNCGGAACACTATTTTC AAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCGGNGNNATGNCATATGCTTAGTAGTA TCTATCGNCAGAAGGC TCTACTATTCGAGTA CTATGACCTGAGT                                                                                                                                 ]
[-] EMBL CD159453             [                                                                                                                                                                                                                                                                           TTCGTTGTTGCTAATTTTCACCGATTGCGTTTATCATTGAATGCAAGTGAATAGCATATACCTGATGGNTTGTTTACTCGCTTTGCTTATGTTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTA TTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACC                                                                                                                                                                                                                                                                              ]
[+] EMBL CD188034             [                                                                                                                                                                                                                                                                                                                                                                                               GCTTCTTACTCTTCCCAAAATACAATTTA TTTGTAGGTTGGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTCATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGC                                                                                                                                                                                                                                                                        ]
[-] EMBL CD150616             [                                                                                                                                                                                                                                                                                                                                                                                                CTTCTTACTCTTCCCAAAATACAATTTATTTTGTAGGTTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTAGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGG                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD116325             [                                                                                                                                                                                                                                                                                                                                                                                                                                        GATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTGCAGATACACGGTTTACGTGGAATANATCTCTGTTAAATGAATGGGAATCTATGCTTAATTCTACA]
[-] EMBL BG931938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGAC                                                                                                                                       ]
[-] EMBL CD089977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCATAGTTCTCGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCAAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGG                                                                                                           ]
[-] EMBL BG930491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGAC                                                                                                                                       ]


>consensus_10469#0 GAGATATACCAGACTAGTAGTAGTAGCAGCAGCAAAAAGCCGAGAAAACACAATTAACGT GAGAAAAATTTATGGTGACATCTAGTGTCACACAAGGTGCGGAATCTGGAAATCGGCACA TTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAG AAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACC GGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTA TCATTGAATGCAAGTGAATAGCATATACCTGATGGGTTGTTTACTCGCTTTGCTTATGTT TACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTATTTGTAGG TTAGATACAAACCTAGCAAAGGCTAAACGTTACTTTTGCGAATGGTTTATGATGAATATA CTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTA TAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCA TAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTT ATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCA AAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTC AGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCT TCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACC CGAAATTCAAGGCATCCAGTATTTACGAACGTGCAGATACACGGTTTACGTGGAATANAT CTCTGTTAAATGAATGGGAATCTATGCTTAATTCTACA



consensusID : consensus_10469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence
                              [TTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATGTTAGTTTCTCCATACTAAAACATATTTTCGTAGTTGAGGAGCCGGCCATCCCAATCATGGCCAAAAAGCACACATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAG--ATTCGGGACCACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGGCAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTATAAACC]

[-] EMBL CD065721             [TTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATGTTAGTTTCTCCATACTAAAACATATTTTCGTAGTTGAGGAGCCGGCCATCCCAATCATGGCCAAAAAGCACACATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAG  ATTCGGGAC                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD163050             [                                                                                                                                                                                                                                    TTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGGGAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGGCAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTATAAACC]


>consensus_10469#1 TTATGATGAATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTC GAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATGTTAGTTTCT CCATACTAAAACATATTTTCGTAGTTGAGGAGCCGGCCATCCCAATCATGGCCAAAAAGC ACACATCTATGGAATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGAT TAAAGAGCGTAAGCGAGTCGGTGAGATTCGGGACCACTATTTTCAAAATAACCAAGAGCG TCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGAATCAAGATGAAT CTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTA CCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCAT CCAGTATTTACGAACGTTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGAC GGGGAAGGCAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCAT AGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAAC TTAAGGTATAAACC



consensusID : consensus_10469#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [TCTGTTAAATGAATGGGAATCTATGCTTAATTCTACATCATCCTTCAAGCATAAGCAAACAGCTGGTTGGAATCGCTTCGATTACTGTGTACCTATCATTCAAGGATATGTTGGAATAATATCATATCCGGAAAGTTTGTCTGACATTCTTAAGGGAAATCTCGTGTATTCTCTCATCTCTCGTCGTAGTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGGCAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTATAAACCAGCTGTTTTACTAGGTGGCAGT]

[+] EMBL CD188677             [TCTGTTAAATGAATGGGAATCTATGCTTAATTCTACATCATCCTTCAAGCATAAGCAAACAGCTGGTTGGAATCGCTTCGATTACTGTGTACCTATCATTCAAGGATATGTTGGAATAATATCATATCCGGAAAGTTTGTCTGACATTCTTAAGGGAAATCTCGTGTATTCTCTCATCTCTCGTCGTAGTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGGCAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTATAAACCAGCTGTTTTACTAGGTGGCAGT]


>consensus_10469#2 TCTGTTAAATGAATGGGAATCTATGCTTAATTCTACATCATCCTTCAAGCATAAGCAAAC AGCTGGTTGGAATCGCTTCGATTACTGTGTACCTATCATTCAAGGATATGTTGGAATAAT ATCATATCCGGAAAGTTTGTCTGACATTCTTAAGGGAAATCTCGTGTATTCTCTCATCTC TCGTCGTAGTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGG CAACTGTGCAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTC TTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTA TAAACCAGCTGTTTTACTAGGTGGCAGT



consensusID : consensus_10469#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [CCCGTCTGACATTGTATAAGATCCACTTGCGATAACCCCCACTGACACCTTTCTTCTTACTCTTCCCAATACATTTATTTGTATGTTATCATTCTATCCTATCGGATGTTAATCGTTTCTTTTGTATAATGGTTATATGATGAATATACTCTGTATATAACTTTATCTGATATAAACTTAGCTTTTACATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCACTCGGCGTTCTCG]

[+] EMBL CD093082             [CCCGTCTGACATTGTATAAGATCCACTTGCGATAACCCCCACTGACACCTTTCTTCTTACTCTTCCCAATACATTTATTTGTATGTTATCATTCTATCCTATCGGATGTTAATCGTTTCTTTTGTATAATGGTTATATGATGAATATACTCTGTATATAACTTTATCTGATATAAACTTAGCTTTTACATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCAATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCACTCGGCGTTCTCG]


>consensus_10469#3 CCCGTCTGACATTGTATAAGATCCACTTGCGATAACCCCCACTGACACCTTTCTTCTTAC TCTTCCCAATACATTTATTTGTATGTTATCATTCTATCCTATCGGATGTTAATCGTTTCT TTTGTATAATGGTTATATGATGAATATACTCTGTATATAACTTTATCTGATATAAACTTA GCTTTTACATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTC ATTATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATTTGAGGAGCCGGCCATCCCA ATCATAGCCAAAAAGCACACAATCTATGGAATATGGGGGCTTGTACGTCACTCGGCGTTC TCG



consensusID : consensus_10469#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [AATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGGTAAGCGAACTTAAATTTAGATTTCTGGCTGGTAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTGTAAGCACTTTGTTTTTCAATAAGACTCCCAACCAAGTAGTAATTGTGTCGTTTAAGGAAATTTTTGAATTTTTTCTGCCAATAATTTATGCTAACAC]

[+] EMBL CD196805             [AATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCAGGTAAGCGAACTTAAATTTAGATTTCTGGCTGGTAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTGTAAGCACTTTGTTTTTCAATAAGACTCCCAACCAAGTAGTAATTGTGTCGTTTAAGGAAATTTTTGAATTTTTTCTGCCAATAATTTATGCTAACAC]


>consensus_10469#4 AATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCA GGTAAGCGAACTTAAATTTAGATTTCTGGCTGGTAGAATCAAGATGAATCTGTGTATTGC CATATGCTTAGTAGTATTCTATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTG AGTCACACATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTAC GAACGTGTAAGCACTTTGTTTTTCAATAAGACTCCCAACCAAGTAGTAATTGTGTCGTTT AAGGAAATTTTTGAATTTTTTCTGCCAATAATTTATGCTAACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10469#0      GAGATATACCAGACTAGTAGTAGTAGCAGCAGCAAAAAGCCGAGAAAACACAATTAACGT 60
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      -----------------------------------------------TTATGATGAATAT 13
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      GAGAAAAATTTATGGTGACATCTAGTGTCACACAAGGTGCGGAATCTGGAAATCGGCACA 120
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      ACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTTCATT 73
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      TTTAAGGATTCAGTACTTCAGCAAAAACGAGCCATCCACCACTGTTTACAAAGATTATAG 180
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      ATAATTGACAGAGTGTCACAAGAACTTAAAGTTGAATGTTAGTTTCTCCATACTAAAACA 133
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      AAATGATAGTTTCCGCTTAATTCTGAGTGATCGATAAGTAGTTTATCAAAATTACAAACC 240
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      TATTTTCGTAGTTGAGGAGCCGGCCATCCCAATCATGGCCAAAAAGCACACATCTATGGA 193
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      GGAGTTGTTTATTTCCATTCTGTATTTTTCGTTGTTGCTAATTTTCACCGATTGCGTTTA 300
consensus_10469#3      ----------------------------------------------------CCCGTCTG 8
consensus_10469#4      -----------------------------------------------------------A 1
consensus_10469#1      ATATGGGGGCTTGTACGTCTAGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAG 253
consensus_10469#2      --------------------------------------------------------TCTG 4
                                                                                   

consensus_10469#0      TCAT-TGAATGCAAGTGAATAGC-ATATACCTGATGGGTTGTTTACTCGCTTTGCTTATG 358
consensus_10469#3      ACAT-TGTATAAGATCCACTTGCGATAACCCCCACTGACACCTTTCTTCTTACTCTTCCC 67
consensus_10469#4      ATAA-CCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCATTTGACAGATATTCA 60
consensus_10469#1      CGAG-TCGGTGAGATTCGG-GACCACTATTTTCAAAATAACCAAGAGCGTCATATTACCA 311
consensus_10469#2      TTAAATGAATGGGAATCTA-TGC--TTAATTCTACATCATCCTTCAAGCATAAGCAAACA 61
                         *                   *          *                          

consensus_10469#0      TTTACCTCTCCCGGACTCACACCTTGCTTCTTACTCTTCCCAAAATACAATTTATTTGTA 418
consensus_10469#3      AATACATTTATTTGTATGTTATCATTCTATCCTATCGGATGTTAAT-CGTTTCTTTTGTA 126
consensus_10469#4      GGTAAGCGAACTTAAAT-TTAGATTTCTGGCTGGTAGAATCAAGATGAATCTGTGTATTG 119
consensus_10469#1      TTTGCAAGATCTTTACT-TCATTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTG 370
consensus_10469#2      GCTGGTTGGAATCGCTTCGATTACTGTGTACCTATCATTCAAGGATATGTTGGAATAATA 121
                         *             *                           **         *  * 

consensus_10469#0      GGTTAGATACAAACCTAGCAA---AGGCTAAACGTTACTTTTGCGAATGGTTTATGATGA 475
consensus_10469#3      TAATGGTTATATGATGAATAT---ACTCTGTATATAACTTTATC---TGATATAAACTTA 180
consensus_10469#4      CCATATGCTTAGTAGTATTCT---A-TCGTCAGAAGGCTTCTACTATTCGAGTACCTATG 175
consensus_10469#1      CCATATGCTTAGTAGTATTCT---A-TCGTCAGAAGGCTTCTACTATTCGAGTACCTATG 426
consensus_10469#2      TCATATCCGGAAAGTTTGTCTGACATTCTTAAGGGAAATCTCGTGTATTCTCTCATCTCT 181
                          *      *             *  *   *      *        *    *       

consensus_10469#0      ATATACTCTATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTT 535
consensus_10469#3      GCTT-TTACATTCATAACGCCAGATCACTACTTTATAAATGCATTAGGGTCGAAAGCCTT 239
consensus_10469#4      ACCT----GAGTCACA-CATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATC 230
consensus_10469#1      ACCT----GAGTCACA-CATTACAACGTTTATCGGATACCGACCCGAAATTCAAGGCATC 481
consensus_10469#2      CGTCGTAGTGTACATCGAACTGGAACAAGATTCAACACACGTGGAATCGACGGGGAAGGC 241
                                   **         * *     *        *                   

consensus_10469#0      CATTATAATTGACAGAGTGTCACAAGAAC--TTAAAGTTGAATTTGAGGAGCCGGCCATC 593
consensus_10469#3      CATTATAATTGACAGAGTGTCACAAGAAC--TTAAAGTTGAATTTGAGGAGCCGGCCATC 297
consensus_10469#4      CAGTAT--TTACGAACGTGT---AAGCAC--TTTGTTT----TTCAATAAGAC-----TC 274
consensus_10469#1      CAGTAT--TTACGAACGTTGTACATCGAA--CTGGAACAAGATTCAACACACGTGGAATC 537
consensus_10469#2      AACTGTG-CAAATACTGTGGAAACAGAACAATTAGTCGATATTTCAGGGCATAGATTTTC 300
                        * * *       *  **         *    *         **              **

consensus_10469#0      CCAATCATAGCCAAAAAGCACA----CAATCTAT-GGAA--TATGGGGGCTTGTACGTCT 646
consensus_10469#3      CCAATCATAGCCAAAAAGCACA----CAATCTAT-GGAA--TATGGGGGCTTGTACGTCA 350
consensus_10469#4      CCAACC--AAGTAGTAATTGTG----TCGTTTAA-GGAAATTTTTGAATTTTTTCTGCCA 327
consensus_10469#1      GACGGGGAAGGCAACT-GTGCA----AATACTGT-GGAA---ACAGAA--CAATTAGTCG 586
consensus_10469#2      TTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGAGTCAACGACCGAACTTAAGGTA 360
                               *                      *   ***               *  *   

consensus_10469#0      AGTGTCGGGGTTTTATTTGATAGTGATTAAAGAGCGTAAGCGAGTCGGTGAGATATTCGG 706
consensus_10469#3      C---TCGGCGTTCTCG-------------------------------------------- 363
consensus_10469#4      ATAATTTATGCTAACAC------------------------------------------- 344
consensus_10469#1      ATATTTCAGGGCATAGATTTTCTTTTGTTCAGCTTCGTGGTTCTGTGCCAATATATTGGA 646
consensus_10469#2      TAAACCAGCTGTTTTACTAGGTGGCAGT-------------------------------- 388
                                                                                   

consensus_10469#0      GAACACTATTTTCAAAATAACCAAGAGCGTCATATTACCATTTGCAAGATCTTTACTTCA 766
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      GTCAACGACCGAACTTAAGGTATAAACC-------------------------------- 674
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      TTTGACAGATATTCAGAATCAAGATGAATCTGTGTATTGCCATATGCTTAGTAGTATTCT 826
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      ------------------------------------------------------------
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      ATCGTCAGAAGGCTTCTACTATTCGAGTACCTATGACCTGAGTCACACATTACAACGTTT 886
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      ------------------------------------------------------------
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      ATCGGATACCGACCCGAAATTCAAGGCATCCAGTATTTACGAACGTGCAGATACACGGTT 946
consensus_10469#3      ------------------------------------------------------------
consensus_10469#4      ------------------------------------------------------------
consensus_10469#1      ------------------------------------------------------------
consensus_10469#2      ------------------------------------------------------------
                                                                                   

consensus_10469#0      TACGTGGAATANATCTCTGTTAAATGAATGGGAATCTATGCTTAATTCTACA 998
consensus_10469#3      ----------------------------------------------------
consensus_10469#4      ----------------------------------------------------
consensus_10469#1      ----------------------------------------------------
consensus_10469#2      ----------------------------------------------------
                                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)