These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 858 fasta sequence [TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTTGTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGATTATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTTCAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATTACT-GTTGTAATACCCT-ATCCTAAAAAGT-ATTC-ATTGTTTTTA-TTA-AAATAAAAAGACATTTTTTTGGG-GGCCCCCTTAAGCTTACTTTACATCTATT-AAAATCC-TGTATTTTTG-ATTG-AAATGTACTACTAATCCTTTGAGATAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCATGTGTGTAATATTAAGGGTTT] [+] EMBL CD131323 [TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTTGTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGATTATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTTCAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCGTCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATNTGTCCATCGCTTGTACCTTCTCGTTACATC ] [+] EMBL BG932519 [ cagGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCt ] [+] EMBL CD144790 [ AAACATGCAGATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAGGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ] [+] EMBL CD144807 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ] [+] EMBL CD144795 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAGTAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATT ] [+] EMBL CD144721 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTC AAAAAAAAACAAAACAAACATT ] [+] EMBL CD144722 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ] [+] EMBL CD144789 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ] [+] EMBL CD144698 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGT ] [+] EMBL CD144708 [ AAACATGCAAGTACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGCCCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATCTGT ] [+] EMBL CD144802 [ AAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTCGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA ] [-] EMBL CD071851 [ AACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGTTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAGAAATCTGAAGAAAATATTTATGTAATTCAATAAACAAATAAAAAAATGAGTGGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGATTATTCTAGAAAGTCTC GTTAAATCAT ] [+] EMBL AW146524 [ AACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGAAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCATGCACTATAATACCAT CCCCCCCCGTTTGTTTTTGTTTAG CCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATC TTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTC AAAAAAAACAAAACAAACATTACTGGTTGTAATACCCTAATCCTAAAAAGT ATTC ATTGTTTTTA TTA AAATAAAAAGACATTTTTTTGGG GGCCCCCTTAAGCTTACTTTACATCTATT AAAATCC TGTATTTTTG ATTG AAATGTACTACTAATCCTTTGAGA ] [+] EMBL CD140629 [ AATATGATTTCATTCTGGTGATGAATCTCTTTCACATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGTACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAGACAAACATTACT GTTGTAGTACCCT ATCATATAAAGTAATTCAATTGTTTTTATTTATAATTAAATAGACATTTTTTTGGGTGTCTCACTTAAGCTTACTTTACATCTATTAAAAATCCATGTATATTTGAATTGAAAATGTACTACTAATCATTTGAAGTAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCATGTGTGTAATATTAAGGGTTT] consensusID : consensus_10482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 721 fasta sequence [TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTGACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCATATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTGGAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNGCAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTGGAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACGGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA] [+] EMBL SMAA80774 [TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTGACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCATATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTGGAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNGCAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTGGAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACA ] [+] EMBL CD144797 [ tAACATTGCAATTTATGTATGACGAATTTGTTGATGAATATGAACCAACAAAATCGGATTCTTA TTCGAAAAAAGTTTCTTTAAGAGGTCATGACGTA GAAGTTTCAGTTCTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACGGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGACTAGACTAGAAAGTCTCTTTTCTATCA] consensusID : consensus_10482#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [CTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACAGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGGAAAAAATTGCTCTTCTTCGAGATATA] [+] EMBL CD077453 [CTTGATACAGCCGGTCAAGAATCATATGCCGGTATAACAGAAACAGCTTATCGTACTTGTGATGGATTCATTATTGTATTTTCAATAACTGACATAGCTTCATTTTACGCTGTTAATGATTTTATGGAAAAAATTGCTCTTCTTCGAGATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10482#1 TAAGAACACTCATTTCAANCTTGTCTCACTGTATTGAAACTAAGGAGACAAAATCATTTG 60 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 ---TTACATAGGGAAAAAATTGCTCTTCTTCGAGATATAGGACATGTTCCAATTATACTT 57 consensus_10482#1 ACTCCTGATAATCTTTATCTGCCACAGTGTACAAAGCAGAAGGAAACTGAATTTATTCAT 120 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 GTTGGGAATAAAGTAGATTTAGCGAATCAAAGAAATGTGTCACAGAGAGAAGCTTTCGAT 117 consensus_10482#1 ATTTTCGCAGGAAAAGTAAAAATTATTTGTTGAATTTTAGTCAAAATGGCGTTACCTTTG 180 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 TATGCTGCAAGAAAGAATATAGAATACATTGAAACTTCAGCTAAAACAAATCACAATGTT 177 consensus_10482#1 GAACGCATCTATCTTGGTATGTTAGGTGTTGGGACTGTTGGTAAAAGTGCATNAACATNG 240 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 CAACAGGTATTTTATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCAAATACTCAA 237 consensus_10482#1 CAATTTATGTATGACGAATTNGTTGATGAATATGAACCAACAAAATCGGATTCTTATTTG 300 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 CCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTATAAATCCTG 297 consensus_10482#1 GAAAAAAGTNTCTTTAAGAGGTCATGACGTAGGANGTTTCAGNTCTTGATACAGCCGGTC 360 consensus_10482#2 --------------------------------------------CTTGATACAGCCGGTC 16 consensus_10482#0 AAAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATAAACAAATAA 357 * *** * consensus_10482#1 AAGAATCATATGCCGGTATA-----ACAGAAACGGCTTATCG-TACTTGTGATGGATTCA 414 consensus_10482#2 AAGAATCATATGCCGGTATA-----ACAGAAACAGCTTATCG-TACTTGTGATGGATTCA 70 consensus_10482#0 AAAAATGAGTTGAGAATGTACACCTGAAAATATTGTTTATTAATGTTTAGACTAGACTAG 417 ** *** * ** * ** * * * * **** * ** * ** * consensus_10482#1 TTATTGTATTTTCAATAACTGAC-ATAGCTTCATTTTACGC-----TGTTAATGATT--- 465 consensus_10482#2 TTATTGTATTTTCAATAACTGAC-ATAGCTTCATTTTACGC-----TGTTAATGATT--- 121 consensus_10482#0 AAAGTCTCTTTTCTATCATGCACTATAATACCATCCCCCCCCCGTTTGTTTTTGTTTAGC 477 * * * ***** ** * ** *** *** * * **** ** ** consensus_10482#1 ----------TTATGTATTTT-ATAAGATGGCCAAAGCGGTAGTTGATATGAAACATGCA 514 consensus_10482#2 ----------TTATGGA-----AAAAATTGCTCTTCTTCGAGATATA------------- 153 consensus_10482#0 CCATCTCTTTTTATGCACTTCAAAAAAATATGATTTCATTCTGGTGATGAATCTCTTTCA 537 ***** * * ** * * consensus_10482#1 AATACTCAACCTCAAATACAACAGAATAAATCACGTGATGACGGTTGTTGCTGCGTTTTA 574 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 CATTTTTAAATTGATCTTTTTTTTCCTGGTGTTTTTGTTAAGAATTTGTCCATCGCTTGT 597 consensus_10482#1 TAAATCCTGANAACAAAACAATTTTCAAAAATCTGAAGAAAATATCTATGTAATTCAATA 634 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 ACCATCTCGTTACATCAGTTGTCTTCAAAAAAAAAACAAAACAAACATTACTGTTGTAAT 657 consensus_10482#1 AACAAATAAAAAAATGAGTTGAGAATGTACACCTGANAATATTGTTTATTAATGTTTAGA 694 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 ACCCTATCCTAAAAAGTATTCATTGTTTTTATTAAAATAAAAAGACATTTTTTTGGGGGC 717 consensus_10482#1 CTAGACTAGAAAGTCTCTTTTCTATCA--------------------------------- 721 consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 CCCCTTAAGCTTACTTTACATCTATTAAAATCCTGTATTTTTGATTGAAATGTACTACTA 777 consensus_10482#1 ------------------------------------------------------------ consensus_10482#2 ------------------------------------------------------------ consensus_10482#0 ATCCTTTGAGATAGTACATACAAGACATTATGTATTATCATTATCATTATTATCTAATCA 837 consensus_10482#1 --------------------- consensus_10482#2 --------------------- consensus_10482#0 TGTGTGTAATATTAAGGGTTT 858 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||