These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1402 fasta sequence [ACTACTACTACTACTTTAAACAGG-AGATGAGATACAA-TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACGATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATGATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATTAAGAGATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCATTGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTCAGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAAGATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG-AAGGTAACATATGCATACCCAAT--AATGATA--AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAAATGAATAGCTCTCAGACTCAATTCCCTTTA] [+] EMBL CD156681 [ACTACTACTACTACTTTAAACAGGAAGATGAGATACAA TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCACTTGTATAGATATTTGTAAACATCTAGATCCCCAACATTATCATAAACt ] [-] EMBL CD120900 [ CTACTACTACTACTTTAAACAGGAAGATGAGATACAA TATATCATCCAATCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAACATCTAGATCCCCAACATTTTCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTC ] [+] EMBL CD083648 [ cgAGG AGATGAGATACAAGTATATCATCCAAGCTATCAATATCATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTGGTGAACATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTCTTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTCATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACGATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATGATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATTAAGAGAT ] [+] EMBL CD156539 [ TAAAGTATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATAAAGACATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCATTGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTCAGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAAGATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAG ] [+] EMBL CD149636 [ TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT AATGATA AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAGCAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGGTGGTTATTTTAATGGTCGTATAATTTGGAGATAACTNCATAAAAGAAAGATNAGAA ] [+] EMBL CD149348 [ TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT AATGATA AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAA ] [+] EMBL CD111837 [ TGATATGTCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTAAACGGATCAAAACTGGTACATTAGTGGAGTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGAAACAACATGTATTTGGTTGAAAGAAAGGT ACATATGCATACCCAATAAAATGATA ] [+] EMBL CD149201 [ TGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAAGGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGGTAATATGGTATATGAAATAGATGTTCCTGTTATTTGGATCAcctc ] [+] EMBL CD119717 [ CATGTATTTGGTTGAAAG AAGGTAACATATGCATACCCAAT AATGATA AAGATAAGAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAAC ] [-] EMBL CD110820 [ ATATGCATACCC AT ATGATANNNAGATAAGAATCATTGNATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAGTCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGTGGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGGTGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA ] [+] EMBL CD158106 [ ATCAAACATAATGAAACAACATCGAAGATGATTGAAGTTGAGGTTGTGGAAAAGCTGAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAACGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATGAAGGAAAGATAAGAAATGAATAGCTCTCAGACTCAATTCCCTTTA] [-] EMBL CD110776 [ ccCCAGCAACCATCCAATATAATGAAACAACATCGAAGATGATTGAAGATGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA ] [-] EMBL CD149394 [ TCGAGATTCGAATACAACTGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGTTATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAA ] consensusID : consensus_10544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 793 fasta sequence [TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGGATGAATATATGGGAACAACCCGAAACGGACAAGAACCAAGAATAGAGTTTGATAATCCTCGCGTCTGTAAAAGTTATCTACTGGATTGTTGTCCAAATGAAATATTATCTGGAACGCGAATGGACTTGGGAAACTGCCTTTTCATACATGACCCTGCTCATAAGGCAGATTACCGCAAAGAACCAGACACGAAAAAAATTTCAGTATGAGCTCGATGCACTAGAGCATTTAGAGGCATTCATACGGGACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA-TAAATCAAC-TAAGCGAGCAAATA-GGAACA-AAG-CTAG-CTAAGGCC-G-AACAACTTGGCGCG-GATGGT-CATGTTGAAG-AGTCTTTGAA-ACTTATG-AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCAGGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG] [+] EMBL CD153382 [TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGGATGAATATATGGGAACAACCCGAAACGGACAAGAACCAAGAATAGAGTTTGATAATCCTCGCGTCTGTAAAAGTTATCTACTGGATTGTTGTCCAAATGAAATATTATCTGGAACGCGAATGGACTTGGGAAACTGCCTTTTCATACATGACCCTGCTCATAAGGCAGATTACCGCAAAGAACCAGACACGAAAAAAATTTCAGTATGAGCTCGATGCACTAGAGCATTTAGAGGCATTCATACGGGACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA TAAATCAAC TAAGCGAGCAAATA GGAACA AAG CTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTGTG AAGGAGGTTGAAGAATTAAACTTAGAACAAGCTACAAGCGAAGCAGATTTACGG ] [+] EMBL CD061279 [ ACTGCGACCAACGTACAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACATTAAATCAACATAAGCGAGCAAATANGGAACACAAG CTAGTCTAAGGCCAGTAACAACTTGGCGCGNGGTGGTCCATGTTGAAGCAGTCTTTGAACACTTATGAAAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCT ] [+] EMBL CD094924 [ CAGATGTTGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGATGAAGCTTCTCAAAAGGCTGAACACA TAAATCAAC TAAGCGAGCAAATA GGAACA AAG CTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTATG AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATAT ] [+] EMBL CD083635 [ GAACA AAGTCTAG CTAAGGCC G AACAACTTGGCGCG GATGGT CATGTTGAAG AGTCTTTGAA ACTTATG AAGGAGGTTGAAGAATTAAACTTAGAAAAAGCTAAAAGCGAAGCAGATTTACGGACTGCAATACCAACAAGCACCTACCAGCAACAAAAGCTCCGAGTCTGTGAAGTTTGCTCTGCTTATCTTGGTGTGCACGACAATGACCGTCGACTCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCGCCAAAAGTTAGATGAACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCAGGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10544#0 ACTACTACTACTACTTTAAACAGGAGATGAGATACAATATATCATCCAATCTATCAATAT 60 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 CATTATTTCTGATCGTGATCTGGTTATACAGATCCTTCAATTGTATAGATATTTGTAAAC 120 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 ATCTAGATCCCCAACATTATCATAAACAAGTATTTGAAAATGATACATATCATCTTTCTC 180 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 TTCATTATAATTATTTACTTAGAATTAGTCGTCATCAATTAGTTTTAAATGGTAACTTTC 240 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 ATCGATTCCTTCCTCCTCAACACATAACCACGAAATTCATATTTCAATATTATAATAACG 300 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 ATGTTGATCAAATTGTTATTTATCGTCATCGAGGTACAGGTTCAATAGAGATATTCAATG 360 consensus_10544#1 -TGGCGATCCAATTGATGCTCGCAATATGTCAGCTACTGATCAAATCCGTGCCCTTTTGG 59 ** **** ***** * * * ** *** * * *** * * consensus_10544#0 ATAAGAAAGTTGGAACAATTTCAAATTATATCAGATTTTTCTCAAAATTTAAACTTAAAG 420 consensus_10544#1 ATGAATATATGGGAACAACCCGAAA------CGGACAAGAACCAAGAATAGAGTTTGATA 113 ** * * * ******* *** * ** *** * * * ** * consensus_10544#0 TATTCAGTGATGATAAATTATTCGCTGTCAAATCATCTTTTATAAAAAAAGTTAAAAATT 480 consensus_10544#1 ATCCTCGCGTCTGTAAAA-GTTATCTACTGGATTGTTGTCCAAATGAAATATTA----TC 168 * * **** ** ** ** * * * * *** *** * consensus_10544#0 AAGAGATCTATTGTGAATTCAACTGAAGAAAGTATTTGAGATAACACAGTAAATATCCAT 540 consensus_10544#1 TGGAA------CGCGAATG-GACTTGGGAAACTGCCTTT--TCATACA-TGACCCTGCTC 218 ** * **** *** **** * * * * *** * * * * consensus_10544#0 TGAAATCTGATCACTTTATGAGTAGGCATATTGAGTGTTACATTTAACAATAACTTGCTC 600 consensus_10544#1 ATAAGGCAGATTACCGCA--------------AAGAACCAGACACGAAAAAAATTT---C 261 ** * *** ** * ** * * * ** ** ** * consensus_10544#0 AGTATTTACCTTTCAAATTTTAAGTACCGCTAGTCTTCTAATTGTAGAGATTACAGCCAA 660 consensus_10544#1 AGTATGAGCTCGATGCACTA-GAGCATTTAGAGGCATTCATAC---GGGACTGCGACCAA 317 ***** * * * ** * ** * * * * ** * * **** consensus_10544#0 GATAACTAATGTGATATATCCTAATGGGAAGATATTATTCTATTATGAGAATATTCCCAA 720 consensus_10544#1 CGTA-CAGATGT------TGCGAAAGCAAAGCTGCGGGAGACTCAGGAGGAATTAACAGA 370 ** * **** * * ** * *** * * * *** * * * * consensus_10544#0 GGAAATTAAAGGAAGAGAACGGAAATCGAAAATCACCGGTGATATAAAGTGTGAAACAGG 780 consensus_10544#1 TGAAGCTTCTCAAAAGG--CTGAACACATAAATCAAC-------TAAGCGAGCAAATAGG 421 *** * ** * * *** * ****** * *** *** *** consensus_10544#0 TAATATGGTATATGAAATAGATGTTCCTGTTAAATGGATCAAAACTGGTACATTAGTGGA 840 consensus_10544#1 AACAAAGCTAGCTAAGGCCGAACAACTTGGCGCGGATGGTCATGTTGAAGAGTCTTTGAA 481 * * * ** * * ** * ** * ** * ** * consensus_10544#0 GTATGAACCCATAGGGAATATTTGTCCAAAATACAATTCAATTGAAGAATGTCAATACGA 900 consensus_10544#1 ------ACTTATGAAGGAGGTTGA---AGAATTAAACTTA---GAAAAAGCTAAAAGCGA 529 ** ** * * ** * *** ** * * *** ** * ** *** consensus_10544#0 AACAACATGTATTTGGTTGAAAGAAGGTAACATATGCATACCCAATAATGATAAAGATAA 960 consensus_10544#1 AGCAG-ATTTACG-GACTGCAATAC--CAACAAGCACCTACC-AGCAACA--AAAGCTCC 582 * ** ** ** * ** ** * **** * **** * ** **** * consensus_10544#0 GAATCATTTGATAGAAAACGAATTGCGTATTCAGAATAGTTCGGATGTTAACGTATTGAG 1020 consensus_10544#1 GAGTCT----GTGAAGTTTGCTCTGCTTATCT----TGGTGTGCACGACAATGA------ 628 ** ** * * * *** *** * ** * * * ** * consensus_10544#0 TCCATCAACAACCATCAAACATAATGAAACAACATCGAATATGATTGAAATTGAGGTTGT 1080 consensus_10544#1 -CCGTCGAC--TCGCTGACCACTTTGGGGGAAAGTTGCATCTAGGTTTTATTGAGATTCG 685 ** ** ** * * ** ** ** * * ** * * ****** ** consensus_10544#0 GGAAAAGCTTAATGGAACATCCGAAGAAACTGTTCAACACTCGAATAGTTCGGATGTTAA 1140 consensus_10544#1 CCAAAAGTTAGATG-AACTGAGGCAGTATGTAAACGAAAATCATATCGTTCGCAGGCGCA 744 ***** * *** *** * ** * * * * * ** ** ***** * * * consensus_10544#0 CGTATTGAGTCCACCAACAACCATCAAATATAATGAAACAACATCGAAGATGATTGAAGA 1200 consensus_10544#1 GGTTTGAAGGATACAACCGCTCCCTTTTTATCACAGTGGAGGAGAGACG----------- 793 ** * ** ** * * * *** * * * ** * consensus_10544#0 TGAGTTTGAAAATATTCTGAATGGAATTTTCAAGGAAACTGTTCGAGATTCGAATACAAC 1260 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 TGCTGAATTTATTGAAGACCGTCAATTGGTCGAATCTGCTATAATCTTGTTCTTGTTGGT 1320 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 TATTTTAATGTTCGTATAATTTGGAAATAACTCCATAAAAGAAAGATAAGAAATGAATAG 1380 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 CTCTCAGACTCAATTCCCTTTA 1402 consensus_10544#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||