These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 657 fasta sequence [AAAACTAAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATTACTTTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAACCTATTACTAAGAATCCTCAGTCAAATTCTACTGATTCAACTAGTAGTGGTTCAGGTGGTGATCGACCTAAACTAAACCTTAAAATTAGAGAGGCCCNCTGTAATACAANTGATGATC] [+] EMBL CD189835 [AAAACTAAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATTACTTTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAG ] [+] EMBL CD133313 [AAAACTAAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGAT AGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATTACTGTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGT ] [+] EMBL CD115763 [ ATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATTACTTTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAACCT ] [+] EMBL CD098240 [ TAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATTACTTTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGC ] [+] EMBL CD171239 [ AGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTGTGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAACCTATTACTAAGAATCCTCAGTCAAATTCTACTGATTCAACTAGTAGTGGTTCAGGTGGTGATCGACCTAAACTAAACC ] [-] EMBL BG931732 [ TCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGCTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAACCTATTACTAAGAATCCTCAGTCAAATTCTACTGATTCAAATAGTAGTGGTTCAGGTGGTGATCGACCTAAACTAAACCTTAAAATTAGAGAG ] [+] EMBL CD132621 [ TATGGACGTCCAAATAGAGGTGGAATGGGTGGATTCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAACCTATTACTAAGAATCCTCAGTCAAATTCTACTGATTCAACTAGTAGTGGTTCAGGTGGTGATCGACCTAAACTAAACCTTAAAATTAGAGAGGCCCNCTGTAATACAANTGATGATC] consensusID : consensus_10587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 415 fasta sequence [AAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCAT-GTGTGACGGATGAAAGTTCCGTGAACCTCGGTA] [-] EMBL CD128216 [AAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGGGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATACGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGTGTG ] [-] EMBL CD065617 [ TATCCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGGCAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCAT GTGTGACGGATGAAAGTTCCGTGAACCTCGGTA] [-] EMBL CD065740 [ TAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCAT GTGgt ] [-] EMBL CD157360 [ TTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTTGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGACATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAG ] [-] EMBL CD157358 [ TTGGTAATCTTCCTCCGAATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGCGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCA ] consensusID : consensus_10587#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 382 fasta sequence [ATTGCGGAAGGACGGTCGGGGGTTCCATCCATTTCGATTACACATTTTCTGGTTGTGATATAGAGGGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTG-GTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGTCGGGGGTTCCATGGCTTTCCTCCAG] [-] EMBL CD072146 [ATTGCGGAAGGACGGTCGGGGGTTCCATCCATTTCGATTACACATTTTCTGGTTGTGATATAGAGGGTGTTAGATTAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTG GTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGTCGGGGGTTCCATGGCTTTCCTCCAG] [-] EMBL CD111247 [ AGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTagtt ] [+] EMBL CD126770 [ ccgGACGCA TC AAGGGTAT CCTATGTAGATTTTAAAAATG ACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTGAATGGTc ] [-] EMBL CD072161 [ TTCAAAGGGTATGCCTATGTAGA TTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTG GTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTAGCATGGGTGGTGGACGGTCGGGGGTTCCATGGC ] [-] EMBL CD181833 [ GGTATGCCTATGTAGATTTTAAAAATGAACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTG GTG ] [+] EMBL CD065579 [ CTCTCTTCGAGTAAATCTAGCAGGTGAAAGACCTGGACGTG GTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGACGTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGCGGTAGACCTAGCATGGGTGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10587#0 AAAACTAAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGA 60 consensus_10587#1 ------AAATGGCTTCAAGAGATAACCGTCTATCCGTTTATGTTGGTAATCTTCCTCCGA 54 consensus_10587#2 -----------------------------------------ATTGCGGAAGGACGGTCGG 19 *** * * ** consensus_10587#0 ATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGAT 120 consensus_10587#1 ATACTATACAAGGGCATTTCGATTACATATTTTCTGGTTGTGATATAGAGAGTGTTAGAT 114 consensus_10587#2 GGGTTCCATC----CATTTCGATTACACATTTTCTGGTTGTGATATAGAGGGTGTTAGAT 75 * * ************* ********************** ********* consensus_10587#0 TAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATG 180 consensus_10587#1 TAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATG 174 consensus_10587#2 TAGTGAGAGACAAACAGACAGACGAATTCAAAGGGTATGCCTATGTAGATTTTAAAAATG 135 ************************************************************ consensus_10587#0 AACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCGGTATGTCACTGGTTCTCATATT 240 consensus_10587#1 AACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCG---------------------- 212 consensus_10587#2 AACAATCCCTCCAGAAAGCATTAACTGTCGACGGTGCG---------------------- 173 ************************************** consensus_10587#0 ACTTTTCTGTTTAGATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGAC 300 consensus_10587#1 --------------ATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGAC 258 consensus_10587#2 --------------ATTGTTGATGGACGCTCTCTTCGAGTAAATCTAGCAGGTGAAAGAC 219 ********************************************** consensus_10587#0 CTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGAC 360 consensus_10587#1 CTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGAC 318 consensus_10587#2 CTGGACGTGGTGGTGGTCATGGTCAATGGGGTATGAACAATGGATATGGAAGTCAGGGAC 279 ************************************************************ consensus_10587#0 GTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTA 420 consensus_10587#1 GTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTA 378 consensus_10587#2 GTGGTGGTTTCGGGAATCAAGGACGTGGTGGCTTTGGAAATCAAGGACGTGGTAGACCTA 339 ************************************************************ consensus_10587#0 GCATGGGTGGTGGACGGATGGAAAGTTATGGACGTCCAAATAGAGGTGGAATGGGTGGAT 480 consensus_10587#1 GCATGTGTGACGGAT-----GAAAGTTCCGTGAACCTCGGTA------------------ 415 consensus_10587#2 GCATGGGTGGTGGACGG-TCGGGGGTTCCATGGCTTTCCTCCAG---------------- 382 ***** *** *** * *** consensus_10587#0 TCGGTGGACAACGACAAAGTTACCATCCCCCAGGATTGTCACGAGAGCAATTAAATGAAC 540 consensus_10587#1 ------------------------------------------------------------ consensus_10587#2 ------------------------------------------------------------ consensus_10587#0 CTATTACTAAGAATCCTCAGTCAAATTCTACTGATTCAACTAGTAGTGGTTCAGGTGGTG 600 consensus_10587#1 ------------------------------------------------------------ consensus_10587#2 ------------------------------------------------------------ consensus_10587#0 ATCGACCTAAACTAAACCTTAAAATTAGAGAGGCCCNCTGTAATACAANTGATGATC 657 consensus_10587#1 --------------------------------------------------------- consensus_10587#2 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||