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Schistosoma mansoni
cluster # 10591 cluster # 10591       Sequences # 18       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10591#0 length = 1059 sequences # 17  
consensus_10591#1 length = 177 sequences # 1  

consensusID : consensus_10591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1059
fasta sequence
                              [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC-AAATAAACAAAAG-TTCTATCAAATCT-ATAT-ATATAT-ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT-GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA-GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT-TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]

[+] EMBL SMW797               [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCTAATATAATATATAATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI977597             [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCCTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL SMAA43861            [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGANATAATAAATAGTATCATTGTTCTTTTCCCCCNAAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTTGGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD074227             [cCATTTATTAATTTGCATGCTTTAAAGAGCAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAAATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAAAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGGGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL SM952                [    TTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAGTTTCTATCAAATCT ATAT A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD136772             [                                                                                                                                                                                                                                                          TTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD139808             [                                                                                                                                                                                                                                                                                                                GATAAATAACNCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD117505             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGAAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATAGTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG                                                                                                   ]
[+] EMBL CD198583             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCC TTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGGTGATAAATT                                                                                                                           ]
[-] EMBL CD131539             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTATGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL AI618988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGAAGGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCTCAGTGATGCAACT                                                                                                                                                                                      ]
[+] EMBL CD131657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCAC ]
[-] EMBL CD131460             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131729             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131603             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCCTTTGATATATCATCACA]
[-] EMBL CD185117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]


>consensus_10591#0 GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATT GTTCTTTTCCCCCAAATAAACAAAAGTTCTATCAAATCTATATATATATATATGTATATG TATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTT TACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATT AAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACG ATAAATAACCCAAATTACTTTTGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGT AAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTG TGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCA GTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTA AAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTG GCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGA AATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGA AGAAGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAA TATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCG ATGTGCACCAAATGACATACCAGCTTGTGATGCAACTTGATTTTGTGGTAAACCCATTTG TAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG ACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAA ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA



consensusID : consensus_10591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence
                              [TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]

[-] EMBL CD185259             [TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]


>consensus_10591#1 TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA TCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTT ATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10591#0      GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATT 60
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      GTTCTTTTCCCCCAAATAAACAAAAGTTCTATCAAATCTATATATATATATATGTATATG 120
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      TATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTT 180
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      TACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATT 240
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      AAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACG 300
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      ATAAATAACCCAAATTACTTTTGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGT 360
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      AAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTG 420
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      TGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCA 480
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      GTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTA 540
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      AAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTG 600
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      GCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGA 660
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      AATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGA 720
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      AGAAGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAA 780
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      TATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCG 840
consensus_10591#1      ------------------------------------------------------------
                                                                                   

consensus_10591#0      ATGTGCACCAAATGACATACCAGCTTGTGATGCAACTTGATTTTGTGGTAAACCCATTTG 900
consensus_10591#1      -----------------------------------------TTTATT-TGTACCATATTG 18
                                                                *** *  *  ***   ***

consensus_10591#0      TAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG 960
consensus_10591#1      TAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATG 78
                       *** *  ****    *   ** **   ***** ** ****** *********** *****

consensus_10591#0      ACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 1020
consensus_10591#1      ACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 138
                       ***    * *** ** ******** ***********************************

consensus_10591#0      ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 1059
consensus_10591#1      ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 177
                       ***************************************




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)