These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1059 fasta sequence [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC-AAATAAACAAAAG-TTCTATCAAATCT-ATAT-ATATAT-ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT-GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA-GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT-TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [+] EMBL SMW797 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCTAATATAATATATAATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGT ] [+] EMBL AI977597 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCCTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGT ] [+] EMBL SMAA43861 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGANATAATAAATAGTATCATTGTTCTTTTCCCCCNAAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTTGGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAg ] [+] EMBL CD074227 [cCATTTATTAATTTGCATGCTTTAAAGAGCAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAAATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAAAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGGGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTAT ] [-] EMBL SM952 [ TTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAGTTTCTATCAAATCT ATAT A ] [+] EMBL CD136772 [ TTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATT ] [-] EMBL CD139808 [ GATAAATAACNCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGA ] [-] EMBL CD117505 [ agGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGAAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATAGTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG ] [+] EMBL CD198583 [ TGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCC TTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGGTGATAAATT ] [-] EMBL CD131539 [ TTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTATGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [-] EMBL AI618988 [ AGAAGGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCTCAGTGATGCAACT ] [+] EMBL CD131657 [ CATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCAC ] [-] EMBL CD131460 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [-] EMBL CD131729 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [-] EMBL CD131527 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [-] EMBL CD131603 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCCTTTGATATATCATCACA] [-] EMBL CD185117 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] consensusID : consensus_10591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] [-] EMBL CD185259 [TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10591#0 GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATT 60 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 GTTCTTTTCCCCCAAATAAACAAAAGTTCTATCAAATCTATATATATATATATGTATATG 120 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 TATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTT 180 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 TACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATT 240 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 AAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACG 300 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 ATAAATAACCCAAATTACTTTTGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGT 360 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 AAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTG 420 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 TGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCA 480 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 GTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTA 540 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 AAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTG 600 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 GCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGA 660 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 AATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGA 720 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 AGAAGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAA 780 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 TATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCG 840 consensus_10591#1 ------------------------------------------------------------ consensus_10591#0 ATGTGCACCAAATGACATACCAGCTTGTGATGCAACTTGATTTTGTGGTAAACCCATTTG 900 consensus_10591#1 -----------------------------------------TTTATT-TGTACCATATTG 18 *** * * *** *** consensus_10591#0 TAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG 960 consensus_10591#1 TAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATG 78 *** * **** * ** ** ***** ** ****** *********** ***** consensus_10591#0 ACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 1020 consensus_10591#1 ACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 138 *** * *** ** ******** *********************************** consensus_10591#0 ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 1059 consensus_10591#1 ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 177 *************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||