These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1078 fasta sequence [TTTTTGGCACGAGGGAGCCCTTTGGAGGGTGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTGGTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTTTCCATCAATATCATATTCTGGTGGTGAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAG-CAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA-GAGGAACTTCTTCACATAATTGA-CAATCACGTAAAACT-CCGAGATTC-AA-CAAAGACAATACAATCCGTCGG-TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT-GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT--CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAAA] [+] EMBL CD079585 [TTTTTGGCACGAGGGAGCCCTTTGGAGGGTGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTGGTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTTTCCATCAATATCATATTCTGGTGGTGAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAG CAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTCAAA CAAg ] [+] EMBL CD082333 [ AAGGCAGTCAGCAATTCAGAGATTTTCATACCAATTCTAAAAACGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGTCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTNTAGTTNTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTNTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCTNNGTCTAG TC AATATGTCGACTAGTCTTTTTACCCCTA TGNATGTGATGTATTTTCTTAAAA TGACTGTNNCT CAG TAAANCTGCT CTTGNNATATTG TGAAA TTTCATTTGNGT AAGNGATA TCATTTACTTA ATGAAAATAAATGNCTgt ] [-] EMBL CD073846 [ CGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTA ] [-] EMBL CD077046 [ GGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATGGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAAGGTCTTGT ] [-] EMBL CD075931 [ TTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAA ] [-] EMBL CD075310 [ CCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGA CAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTA ] [-] EMBL AI395351 [ TGTTTGGTGCCCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCA GAGGAACTTCTTCACATAATTGACCAATCACGTAAAACT CCGAGATTC AA CAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAA ] [-] EMBL AI395061 [ CTAAACCAGGAGG ACTTCTTCACAT ATTGC CCATCACGTAAAACTCCCGAGATTC AACCAAAGACAATACAATCCGTCGG TCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGCTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAAA] [-] EMBL AI394938 [ CAATCCTTCGGATCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTCTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTCTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATAGTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGACGTAAAAAAAAA ] [-] EMBL AI394980 [ CCGTCGG TCCCCCTGTGTAGTATTTAGTGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCT GTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGT CTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGAAAAA ] consensusID : consensus_10597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence [TNAATTCGGCACCAGGGAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCTGTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTCCTATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGT] [+] EMBL CD081485 [TNAATTCGGCACCAGGGAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTATGACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCTGTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTCCTATTTGTGTAAAGTGATATTCATTTACTTATATGAAAATAAATGTCTTGT] [+] EMBL CD138337 [ TTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGAC ] consensusID : consensus_10597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [AAATACAGTCAACTTCCAGCAAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACANAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCA] [+] EMBL AI067883 [AAATACAGTCAACTTCCAGCAAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACANAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAATAAAAGCGCA] consensusID : consensus_10597#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTGAATTTGCCCCACATTTTGGTTTTGGCGGCTTTGGAGGTGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTGGTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTTTCCATCAATATCATATTCTGGTGGTGAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCAC] [+] EMBL CD178647 [TTGAATTTGCCCCACATTTTGGTTTTGGCGGCTTTGGAGGTGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTGGTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTTTCCATCAATATCATATTCTGGTGGTGAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCAC] consensusID : consensus_10597#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GGYAATAATAACRCTGAAATTCCCGTATCACAAATTAAATACTTGAATTCTAGTTAATTTCACTTTTTTTTTGACATGAATCGTTGTTATTCATTTAAAAAAACCTTCAACATGTTGAGACATTGTCATACTAATTCTTAGCATTGAGAAGTGTCAATTATTCACAATGAGTCACYTTTTACATGTATTTGAGGGGCTAAAAGCATTCTATCTAAACACGTAATCAAATCCCTTTCCTCCTACTGAAATTCCGATTATTTTGATTTGATTTTCAGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGACAATACAATCCGT] [-] EMBL SM1247334 [GGYAATAATAACRCTGAAATTCCCGTATCACAAATTAAATACTTGAATTCTAGTTAATTTCACTTTTTTTTTGACATGAATCGTTGTTATTCATTTAAAAAAACCTTCAACATGTTGAGACATTGTCATACTAATTCTTAGCATTGAGAAGTGTCAATTATTCACAATGAGTCACYTTTTACATGTATTTGAGGGGCTAAAAGCATTCTATCTAAACACGTAATCAAATCCCTTTCCTCCTACTGAAATTCCGATTATTTTGATTTGATTTTCAGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGACAATACAATCCGT] consensusID : consensus_10597#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 354 fasta sequence [CCAGATTCTTCACGAGGCGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGANCATCACGTANAACTCCGAGATTCAAC] [+] EMBL CD077715 [CCAGATTCTTCACGAGGCGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCAAAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGTATCCCTCAACCAGAGGAACTTCTTCACATAATTGANCATCACGTANAACTCCGAGATTCAAC] [-] EMBL CD144515 [ AATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTCTTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTTTCTTTCTGTTTGATGACCTTTCTACTTGGAAAAGTTATTG ] consensusID : consensus_10597#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [ATTGCTTCCAATTGCTTTAGGTTTTTTTTCCCATTAAAGGGGCAGGTTCTTTCAAAATTGGGCCTTTTCTTGCTTTATGGCCGTTTCCACCTCGATTTTTGTTTTGGGAATGTGGTTAACTTGATGCTTACCTGTTCTAGGTCAAATATGGCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGGTATTCATTTACTTATTTGGAAGTAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395797 [ATTGCTTCCAATTGCTTTAGGTTTTTTTTCCCATTAAAGGGGCAGGTTCTTTCAAAATTGGGCCTTTTCTTGCTTTATGGCCGTTTCCACCTCGATTTTTGTTTTGGGAATGTGGTTAACTTGATGCTTACCTGTTCTAGGTCAAATATGGCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAAGTGGTATTCATTTACTTATTTGGAAGTAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 TNAATTCGGCACCAGGGAAAGCCAATAAATCCACTTCCTACACTTCAGTTCATGTTTTGC 60 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 GTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTACAAAAGTAT 120 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 CCATCTTTTGTTATAGAAGGCGACACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCA 180 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 AAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTC 240 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ----AAATACAGTCAACTTCCAGCAAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTG 56 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 TTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTT 300 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 TTTTCGGTTGCGCCATCTTAACTTGGTTTGATTTTTGGGGATTAAAAGGCAGCAGCAATT 116 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 TCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACG 360 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ------------------------------------------------------------ consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 CAGAGAAAACCATACCAATTCTAAAAAAGCCAATAAATCCACTTCCTACACTTCAGTTCA 176 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 GGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGT 420 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 --------------------------------------------------------TTTT 4 consensus_10597#3 -----------------------------------------TTGAATTTGCCCCACATTT 19 consensus_10597#2 TGTTTTGCGTTTCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGTCTTAC 236 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCA 480 consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 TGGCACGAGGGAGCCCTTTGGAGGGTGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTG 64 consensus_10597#3 TGGTTTTGGCGG---CTTTGGAGG-TGCCGAAATACAGTCAACTTCCAGCAAGGTTGTTG 75 consensus_10597#2 AAAAGTATCCATCTTTTGTTATAGAAGGCGACACGTA-TCCTCCACCCGCCTGGC----- 290 consensus_10597#5 --------CCAGATTCTTC--------ACGAGGCGTA-TCCTCCACCCGCCTGGC----- 38 consensus_10597#1 ACAAAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTT 540 consensus_10597#6 -----------------------------------------ATTGCTTCCAATTGCTTTA 19 consensus_10597#4 ------------------------GGYAATAATAACRCTGAAATTCCCGTATCACAAATT 36 * consensus_10597#0 GTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTT-TCCATCAATATCATATTCT 123 consensus_10597#3 GTGTAGATTTAACTTGAAATCATTGCTGACCGCATCTCTT-TCCATCAATATCATATTCT 134 consensus_10597#2 GAGCCCACTTGGC--AAAATCCTTACAATTCCTGAAATAT-TCTATTATTCTTATGACT- 346 consensus_10597#5 GAGCCCACTTGGC--AAAATCCTTACAATTCCTGAAATAT-TCTATTATTCTTATGACT- 94 consensus_10597#1 AGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATT-TGAGCT-TTTTCTGGCTTT 598 consensus_10597#6 GGTTTTTTTTCCCATTAAAGGGGCA-GGTTCTTTCAAAAT-TGGGCC-TTTTCTTGCTTT 76 consensus_10597#4 AAATAC-TTGAATTCTAGTTAATTTCACTTTTTTTTTGACATGAATCGTTGTTATTCATT 95 * * * * * consensus_10597#0 GGTGGTGAGTTATGGCCAACATAGGAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCA-TC 182 consensus_10597#3 GGTGGTGAG---------------GAATGTGGGCTGTGGTTGTTTTCGGTTGCGCCA-TC 178 consensus_10597#2 -GTGTTTGG---------------TTTCGACCTCTTTGGATATCTT-GGTTACCCTACTC 389 consensus_10597#5 -GTGTTTGG---------------TTTCGACCTCTTTGGATATCTT-GGTTACCCTACTC 137 consensus_10597#1 -ATGACAGT----------------TCCCACATCAATCTCTGTTTA-GAGAATGTGG--- 637 consensus_10597#6 -ATGGCCGT----------------TTCCACCTCGATTTTTGTTTT-GGGAATGTGG--- 115 consensus_10597#4 TAAAAAAACCTTCAACATG---TTGAGACATTGTCATACTAATTCTTAGCATTGAGAAGT 152 * * consensus_10597#0 TTAACTTGGT-TTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACC 241 consensus_10597#3 TTAACTTGGT-TTGATTTTTGGGGATTAAAAGGCAGCAGCAATTCAGAGAAAACCATACC 237 consensus_10597#2 CTAACTTTGT-CTCATATGCCATG--CAAAATAAAGTTTCTTTCTGTTTGATGACCTTTC 446 consensus_10597#5 CTAACTTTGT-CTCATATGCCATG--CAAAATAAAGTTTCTTTCTGTTTGATGACCTTTC 194 consensus_10597#1 TTAACTTGATGCTTACCTGTTCTAGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTG 697 consensus_10597#6 TTAACTTGATGCTTACCTGTTCTAGGTCAAATATGGCGACTAGTCTTTTTACCCCTATTG 175 consensus_10597#4 GTCAATTATTCACAATGAGTCACYTTTTACATGTATTTGAGGGGCTAAAAGCATTCTATC 212 * * ** * * * * consensus_10597#0 AATTCTAAAAAAGCCAATAAATC-CACTTCCTACACTTCAGTTCA---TGTTTTG-CGTT 296 consensus_10597#3 AATTCTAAAAAAGCCAATAAATC-CACTTCCTACACTTCAGTTCA---TGTTTTG-CGTT 292 consensus_10597#2 TACT-TGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCT---TTCGAAA-TATA 501 consensus_10597#5 TACT-TGGAAATGTTATTGAAGGACAGTTGCTATCTACGGGCGCT---TTCGAAA-TATA 249 consensus_10597#1 TATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGC--TCCTTTG-TATA 754 consensus_10597#6 TATGTGATGTATTTTCTTAAAATTGACTGTCTCCAGTTAAACTTGC--TCCTTTG-TATA 232 consensus_10597#4 TA-----AACACGTAATCAAATCCCTTTCCTCCTACTGAAATTCCGATTATTTTGATTTG 267 * * ** * * * consensus_10597#0 TCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGT--CTTACAAAAGTATC 354 consensus_10597#3 TCCTGAGGGTATCGGCGGGTGTTCGAGGAGATGTCACGGATCGT--CTTACAAAAGTATC 350 consensus_10597#2 CTTAGATGATATCCCAGTCTGGTCGAAATTGTA-CACAAATCGTATCCCTCAACCAGAGG 560 consensus_10597#5 CTTAGATGATATCCCAGTCTGGTCGAAATTGTA-CACAAATCGTATCCCTCAACCAGAGG 308 consensus_10597#1 TTGTTGAAA-ATTCCTATTTGTGTAAAGTGATA-TTCATTTACT--TATATGAAAATAAA 810 consensus_10597#6 TTGTTGAAA-ATTTTCATTTGTGTAAAGTGGTA-TTCATTTACT--TATTTGGAAGTAAA 288 consensus_10597#4 ATTTTCAGATATCCCAGTCTGGTCGAAATTGTA-CACAAATCGTATCCCTCAACCAGAGG 326 ** ** * * * * * * consensus_10597#0 CATCTTTTGTTATAGAAGGCGA-CACGTATCCTCCACCCGCCTGGCGAGCCCACTTGGCA 413 consensus_10597#3 CATCTTTTGTTATAGAAGGCGA-CACGTATCCTCCACCCGCCTGGCGAGCCCAC------ 403 consensus_10597#2 AACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACANAGACAATACAAT 620 consensus_10597#5 AACTTCTTCACATAATTGANCATCACGTANAACTCCGAGATTCAAC-------------- 354 consensus_10597#1 TGTCTTGT---------------------------------------------------- 818 consensus_10597#6 TGTCTTGTAATCTTCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 334 consensus_10597#4 AACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCAACAAAGACAATACAAT 386 * * consensus_10597#0 AAATCCTTACAATTCCTGAAATATTCTATTATTCTTATGACTGTGTTTGGTTTCGACCTC 473 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 CCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTTAGTTTTTTTTACCAAT 680 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 CCGT-------------------------------------------------------- 390 consensus_10597#0 TTTGGATATCTTGGTTACCCTACTCCTAACTTTGTCTCATATGCCATGCAAAATAAAGTT 533 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 AAAAGCGCA--------------------------------------------------- 689 consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 TCTTTCTGTTTGATGACCTTTCTACTTGGAAATGTTATTGAAGGACAGTTGCTATCTACG 593 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 GGCGCTTTCGAAATATACTTAGATGATATCCCAGTCTGGTCGAAATTGTACACAAATCGT 653 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ATCCCTCAACCAGAGGAACTTCTTCACATAATTGACAATCACGTAAAACTCCGAGATTCA 713 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 ACAAAGACAATACAATCCGTCGGTCCACCTCTGTAGTATTTAATGCATACAACTGGCTTT 773 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 AGTTTTTTTTACCAATAAAAGCGCAAGGTCGTATCATATTTGAGCTTTTTCTGGCTTTAT 833 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 GACAGTTCCCACATCAATCTCTGTTTAGAGAATGTGGTTAACTTGATGCTTACCTGTTCT 893 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 AGTTCAAATATGTCGACTAGTCTTTTTACCCCTATTGTATGTGATGTATTTTCTTAAAAT 953 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 TGACTGTCTCCAGTTAAACTTGCTCCTTTGTATATTGTTGAAAATTTTCATTTGTGTAAA 1013 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 GTGATATTCATTTACTTATATGAAAATAAATGTCTTGTAATCTTCCCGAAAAAAAAAAAA 1073 consensus_10597#3 ------------------------------------------------------------ consensus_10597#2 ------------------------------------------------------------ consensus_10597#5 ------------------------------------------------------------ consensus_10597#1 ------------------------------------------------------------ consensus_10597#6 ------------------------------------------------------------ consensus_10597#4 ------------------------------------------------------------ consensus_10597#0 AAAAA 1078 consensus_10597#3 ----- consensus_10597#2 ----- consensus_10597#5 ----- consensus_10597#1 ----- consensus_10597#6 ----- consensus_10597#4 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||