These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 963 fasta sequence [NATTCGGCACGAGGCGTTGGTACTGTGTTAGGTCGTAATTTATTTGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTCGTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCCCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTAAGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCCCATTAATTATAATTACGTTTCGTTATAGTTTCTGA--TTTTTTTCTCCTCACTCATGGTTTTTATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAAACAGTGACATGATATAAAGAGTA] [+] EMBL CD083211 [NATTCGGCACGAGGCGTTGGTACTGTGTTAGGTCGTAATTTATTTGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTCGTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTNTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGT ] [+] EMBL CD202823 [ CAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTAC ] [-] EMBL CD076784 [ TGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTTTGTTTTGGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCCCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTAAGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCCCATTAATTATAATTACGTTTCGTTATAGTTTCTGATTTTTTTTTCTCCTCACTCATGGTTTTTATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAAACAGTGACATGATATAAAGAGTA] [-] EMBL CD085915 [ TAAACACGTCCATACATTGTTACTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCACCTTCTGTTCTTTGTGTATGTTTTGTTCCACTATTCTGTGCTTCTTCGTTTCTGGTGTAAGTTGTTTTGAAATTTTCATCTATGGTCAATATTTTATTTCTTAAGTTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTCTTACTCTTACATTACTATTAATTATAATTACGTTTCGTTATAGTTTCTGA TTTTTTTCTCCTCctgtg ] consensusID : consensus_10605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence [TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGATTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG] [+] EMBL CD097283 [TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGATTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG] [+] EMBL CD097286 [TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGACTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGCCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGGTGCACCTGAA ] consensusID : consensus_10605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 461 fasta sequence [GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGA] [-] EMBL CD146619 [GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGCTTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTT ] [+] EMBL CD198550 [ ATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCT ] [-] EMBL CD142494 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATTCTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [-] EMBL CD198471 [ TGCACGTATGTCTGGCAAACGCTGGATACGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [-] EMBL CD142320 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [-] EMBL CD142365 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [-] EMBL CD142481 [ TGCACGTATGTCTGGCTAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [-] EMBL CD142417 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ] [+] EMBL CD170059 [ CACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGG ] [+] EMBL CD113070 [ CACGTGTGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGG ] [-] EMBL CD201067 [ ACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATT ] [+] EMBL BG931590 [ GTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10605#0 ------------------------------------------------------------ consensus_10605#2 GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTAT 60 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ------------------------------------------------------------ consensus_10605#2 GGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGC 120 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ------------------------------------------------------------ consensus_10605#2 CATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCAT 180 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ---------------NATTCGGCACGAGGC-GTTGGTACTGTGTTAGGTCGTAATTTATT 44 consensus_10605#2 TATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATT 240 consensus_10605#1 ------------------TCGCGTCAAGGT--TTTAATCTAGATTAGAC---AAGTTGTT 37 ** * ** ** **** ** ** ** consensus_10605#0 TGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCA-ATACCGGAAAAGA 103 consensus_10605#2 TGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCA-ATACCGGAAAAGA 299 consensus_10605#1 TTCTGCATAGAAGTGGGTA-GACGAATCAATGACGTAACATAGGTAGATACCACATTAG- 95 * * * *** * * * *** * *** ** * * * * ***** * ** consensus_10605#0 AATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTG-GGCTGCTACCATTTGGATCA 162 consensus_10605#2 AATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTG-GGCTGCTACCATTTGGATCA 358 consensus_10605#1 --TCCCTTTCGGTGGTGCAGGGTGTTAG-ATCACAAATGAGGCTTCTATATTCCTGCTGA 152 * ** ** * * * * ** *** ** **** *** * * * * consensus_10605#0 ATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTT 222 consensus_10605#2 ATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTT 418 consensus_10605#1 GATTTCGTCGA--TGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTA-- 208 *** * ** * * * * * * * * *** ** *** consensus_10605#0 TTTGGCTTCACTTTGCTTGTTTTATTTCT-TCTAATTGCTGTGACAACATCTGT-TACTG 280 consensus_10605#2 TTTGGCTTCACTTTGCTTGTTTTATTTCT-TCTAATTGCTGTGA---------------- 461 consensus_10605#1 -TGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAA 267 * * * ** **** * * * * * ***** * consensus_10605#0 TTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTC 340 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 AATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAA 327 consensus_10605#0 TTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCA 400 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACAT 387 consensus_10605#0 AAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTT 460 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 AGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTG----AAATAGGGTGAATTC 443 consensus_10605#0 GCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTC 520 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG-------- 495 consensus_10605#0 GTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTA 580 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTC 640 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTA 700 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 AGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCAT 760 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCC 820 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CATTAATTATAATTACGTTTCGTTATAGTTTCTGATTTTTTTCTCCTCACTCATGGTTTT 880 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 TATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAA 940 consensus_10605#2 ------------------------------------------------------------ consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ACAGTGACATGATATAAAGAGTA 963 consensus_10605#2 ----------------------- consensus_10605#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||