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Schistosoma mansoni
cluster # 10627 cluster # 10627       Sequences # 19       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10627#0 length = 1059 sequences # 7  
consensus_10627#1 length = 858 sequences # 3  
consensus_10627#2 length = 701 sequences # 4  
consensus_10627#3 length = 577 sequences # 4  
consensus_10627#4 length = 233 sequences # 1  

consensusID : consensus_10627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1059
fasta sequence
                              [TTATATTTTAGTCAATCAGGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGGTTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGC-GGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTTTCTTCTTCAGAAACTTTTGTTTCAGCTTCAGCATCGAATGACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCCAGAGTCGTCACTATCTTCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGTATGAGAGTCACTTGTAAGTGGATTGTTAGCAGACGGCCCTCGTGCCGAATCTGGC]

[+] EMBL CD074639             [TTATATTTTAGTCAATCAGGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGGTTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGC GGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD120564             [                                                                                                                                                                                                                GCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD120563             [                                                                                                                                                                                                                GCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD150514             [                                                                                                                                                                                                                                                                                                  TTCAGCTTCAACTA TTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGCTGGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTT                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD096137             [                                                                                                                                                                                                                                                                                                                                                   atACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGC GGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD080714             [                                                                                                                                                                                                                                                                                                                                                                         TTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGAAGGC GGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTTTCTTCTTCAGAAACTTTTGTTTCAGCTTCAGCATCGAATGACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCCAGAGTCGTCACTATCTTCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGTATGAGAGTCACTTGTAAGTGGATTGTTAGCAGACGGCCCTCGTGCCGAATCTGGC]
[+] EMBL CD133925             [                                                                                                                                                                                                                                                                                                                                                                                     GACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGC GGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATCGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAA                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_10627#0 TTATATTTTAGTCAATCAGGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATC AATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTT AAGAAGTAACGTCAGAAAAAACGGTTATATACAAAGAAACAATCCTAGAGTAGTTACTCT AATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGA GGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCA ACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATT TTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGCGGAATTGGTGGG AGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGAC TTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGA TATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGA TTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGT GAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGT AAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTA TGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAGCGAGCTTG GCCCAATCCAAAAGTTTGTTTTCTTCTTCAGAAACTTTTGTTTCAGCTTCAGCATCGAAT GACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCCAGAGTCGTCACTATCT TCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGTATGAGAGTCACTTGTA AGTGGATTGTTAGCAGACGGCCCTCGTGCCGAATCTGGC



consensusID : consensus_10627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 858
fasta sequence
                              [TTTTTTTTTTTTTTTTATACAAGATTTATATTTTAGTCAATCAGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGG-TTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTAAAAAAAATTTATGAGAGTTAGATTCAGTGAAGTAACATGGTTGTTATGAAAAGCATCTTCATAAGTTTCTGAAATTTACGTTAGACAGAACCATTTTTGTATAAAATGACAAAGAAATGGAAATATTCTAGATTATANGGATACAAACAATCGAAGAAAGGAAAATAATAAATATATGTAACTAAACAAAAGATTATTTTAAATGGTCCACTCCTAATTCCAAGTCTCTTAACTATCTTAAAACATTTTTATTTCATGAACACATACTTTTTTCTTGAATCACATCTTTGATGCCTATTGATTCTTGCTATCATTAATACTTTTAGTACATGTACTACTCTGGCATTTCGCTGTGCTGGTTGATATGGTGTAGCAAATTCAGCCGATAAACACGTGTCAAATTCTTCGTTATGTATGACTGACTGAATGAGTTTGTCGCC]

[+] EMBL AI395405             [TTTTTTTTTTTTTTTTATACAAGATTTATATTTTAGTCAATCAGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGG TTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGGAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCctt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD075074             [                         TTATATTTTAGTCAATCAGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGG TTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTAAAAAAAATTTATGAGAGTTAGATTCAGTGAAGTAACATGGTTGTTATGAAAAGCATCTTCATAAGTTTCTGAAATTTACGTTAGACAGAACCATTTTTGTATAAAATGACAAAGAAATGGAAATATTCTAGATTATAN                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD081244             [                          TATA TTTAGTC ATCAGGGTTTTCAACAGATTAGTATG TGTAGATT AGATTATNCAATAAACCCAGGAACTGANCAAAAGTGATAAGATTACCAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAG AAAAACGGTTTATATACAAAGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTAAAAAAAATTTATGAGAGTTAGATTCAGTGAAGTAACATGGTTGTTATGAAAAGCATCTTCATAAGTTTCTGAAATTTACGTTAGACAGAACCATTTTTGTATAAAATGACAAAGAAATGGAAATATTCTAGATTATAAGGATACAAACAATCGAAGAAAGGAAAATAATAAATATATGTAACTAAACAAAAGATTATTTTAAATGGTCCACTCCTAATTCCAAGTCTCTTAACTATCTTAAAACATTTTTATTTCATGAACACATACTTTTTTCTTGAATCACATCTTTGATGCCTATTGATTCTTGCTATCATTAATACTTTTAGTACATGTACTACTCTGGCATTTCGCTGTGCTGGTTGATATGGTGTAGCAAATTCAGCCGATAAACACGTGTCAAATTCTTCGTTATGTATGACTGACTGAATGAGTTTGTCGCC]


>consensus_10627#1 TTTTTTTTTTTTTTTTATACAAGATTTATATTTTAGTCAATCAGGTTTTTCAACAGATTA GTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGATTT ACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGGTTATATACAAAG AAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAACG TTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACA CCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGA CCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCTAAA AAAAATTTATGAGAGTTAGATTCAGTGAAGTAACATGGTTGTTATGAAAAGCATCTTCAT AAGTTTCTGAAATTTACGTTAGACAGAACCATTTTTGTATAAAATGACAAAGAAATGGAA ATATTCTAGATTATANGGATACAAACAATCGAAGAAAGGAAAATAATAAATATATGTAAC TAAACAAAAGATTATTTTAAATGGTCCACTCCTAATTCCAAGTCTCTTAACTATCTTAAA ACATTTTTATTTCATGAACACATACTTTTTTCTTGAATCACATCTTTGATGCCTATTGAT TCTTGCTATCATTAATACTTTTAGTACATGTACTACTCTGGCATTTCGCTGTGCTGGTTG ATATGGTGTAGCAAATTCAGCCGATAAACACGTGTCAAATTCTTCGTTATGTATGACTGA CTGAATGAGTTTGTCGCC



consensusID : consensus_10627#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 701
fasta sequence
                              [GCGAACAAATACCACCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGATGGGAGCTGACTGGCGTGGAGGCGGAATTGCCGGGAGTGGACGAACGACCGAGTCTTGGTCTATCTGCACGACTGACGGGTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTTTCTTCTTCAGGAACTTTTGTTTCAGCTTCAGCATCGAATGACAACATTATAAGCTCGTTATTTCGCAGATGTCTAGGTCGTCCTACTTTGCTGCTGCCCTGATCATGTTACTATTTACTTTTTGTATATCCATTNTGTTGAGATATTCAAGTCAACAGCTTGNTGGNTGTA]

[+] EMBL CD096139             [GCGAACAAATACCACCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGATGGGAGCTGACTGGCGTGGAGGCGGAATTGCCGGGAGTGGACGAACGACCGAGTCTTGGTCTATCTGCACGACTGACGGGTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGGATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD095645             [                                                                                                           TCTTGTTCTATCTGTACGACTGACGGTTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTTTCTTCTTCAGGAACTTTTGTTTCAGCTTCAGCATCGAATGACAACATTATAAGCTCGTTATTTCGCAGATGTCTAGGTCGTCCTACTTTGCTGCTGCCCTGATCATGTTACTATTTACTTTTTGTATATCCATTNTGTTGAGATATTCAAGTCAACAGCTTGNTGGNTGTA]
[-] EMBL CD181892             [                                                                                                                                             CAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGAAGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTA                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD120987             [                                                                                                                                                                                                                                             TAACTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAACCGCGGGA                                                                                                                                                                                                                      ]


>consensus_10627#2 GCGAACAAATACCACCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGATGGGAG CTGACTGGCGTGGAGGCGGAATTGCCGGGAGTGGACGAACGACCGAGTCTTGGTCTATCT GCACGACTGACGGGTGACTTTCAACAGACTTCATTCTAGGTGGCGACGGTATTCCATACT TTTCACGACGCTCCTTGGCTCGATCACGATATTGACCGGATGCGCTTGGCCGACTACTAA CTTGTCTAGATGCTACTGATTTCGCATGATTACTGGCCGTTTGAGCACCAATCTGCATTA ACGATGCTATTGAAAGGGAATTTTTAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTT GTACAGGGGTTGGAACAGGAATTGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAAT TTTCATAATGGAGGCCAGAAAATGCTCTATGTTTTTGAAGAGTTGCTGCATCTTTGAAAC CGCGGGAGCACAACATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTTTCTTCTTCAG GAACTTTTGTTTCAGCTTCAGCATCGAATGACAACATTATAAGCTCGTTATTTCGCAGAT GTCTAGGTCGTCCTACTTTGCTGCTGCCCTGATCATGTTACTATTTACTTTTTGTATATC CATTNTGTTGAGATATTCAAGTCAACAGCTTGNTGGNTGTA



consensusID : consensus_10627#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 577
fasta sequence
                              [GGACAAAGAAAACTAAGTCATTACCTTAAAGTTGGAGTAACGATGAAAGGCATTTGTAACATAAAAATCTGACCACTGGAATGCTTTATACTTCACTTTATATAGCACAGTCTTCAACGCATTGGTTCTTGATATAACTTGAGCAGTTGATGCATCTCAGGAGAGGTAATTTTACCAGACTTAGGGGATGAGGGTCACAATTTGTGCTGTTAGTAAACCTTTAATAACAACTAAGTTTAAAACTTGAACAACACAAAACAAGTTAAATTTGAAATTACTTTCATGAAATCACTGTCATAAAGGGTTGATAAAAAGTAGTCCCTATACAGCATATGTATTTGGTGCTCCTTTGTACCAATATGTATGTGTTTAAATAAATAAATAAACACAGCAACTAGCTAATACCTGATTAGGTATGACAAACGAATAACTAAAAATCTCGCTTGAAACTTAGTCTTACCGATCGAAAACTAAGGTTACTAAACTTGCGCATACCTGACTGGGGTGGAGGCGGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTC]

[-] EMBL CD192069             [GGACAAAGAAAACTAAGTCATTACCTTAAAGTTGGAGTAACGATGAAAGGCATTTGTAACATAAAAATCTGACCACTGGAATGCTTTATACTTCACTTTATATAGCACAGTCTTCAACGCATTGGTTCTTGATATAACTTGAGCAGTTGATGCATCTCAGGAGAGGTAATTTTACCAG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD142429             [                                                                                            TCACTTTATATAGCACAGTCTTCAACGCATTGGTTCTTGATATAATTTGAGCAGTTGATGCATCTCAGGAGAGGTAATTTTACCAGACTTAGGGGATGAGGGTCACAATTTGTGCTGTTAGTAAACCTTTAATAACAACTAAGTTTAAAACTTGAACAACACAAAACAAGTTAAATTTGAAATTACTTTCATGAAATCACTGTCATAAAGGGTTGATAAAAAGTAGTCCCTATACAGCATATGTATTTGGTGCTCCTTTGTACCAATATGTATGTGTTTAAATAAATAAATAAACACAGCAACTAGCTCATACCTGATTAGGTATGACAAACGAATAACTGAAAATCTCG                                                                                                                                       ]
[-] EMBL CD142421             [                                                                                                                                                                                                                                       TAAGTTTAAAACTTGANCANCACAAAACAAGTTAAATTTGAAATTACTNTCATGAAATCACTGTCATAAAGGGTTGATAAAAAGTAGTTCCTATACAGCATATGTATTTGGTGCTCCTTTGTACCAATATGTATGTGTTTAAATAAATAAATAAACACAGCAACTAGCTAATACCTGATTAGGTATGACAAACGAATAACTAAAAATCTCGCTTGAAACTTAGTCTTACCGATCGAAAACTAAGGTTACTAAACTTGCGCATACCTGACTGGGGTGGAGGCGGAATTGGTGGGAGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTC]
[-] EMBL CD142427             [                                                                                                                                                                                                                                                                                                                                                        CTCCTTCGTACCAATATGTATGTGTTTAAATAAATAAATAAACTCAGCAACTAGCTAATGCCTGATTAGGTATGACAAACGAATAACTAAAAATCTCGCTTGAAACTTAGTCTTTCCGATCGAAAACTAAGGTTGCTAAACTAGCGCATACCTGACTGGGGTGGAGGCGGAATTGGTGGGAGTGGAGGAA                                           ]


>consensus_10627#3 GGACAAAGAAAACTAAGTCATTACCTTAAAGTTGGAGTAACGATGAAAGGCATTTGTAAC ATAAAAATCTGACCACTGGAATGCTTTATACTTCACTTTATATAGCACAGTCTTCAACGC ATTGGTTCTTGATATAACTTGAGCAGTTGATGCATCTCAGGAGAGGTAATTTTACCAGAC TTAGGGGATGAGGGTCACAATTTGTGCTGTTAGTAAACCTTTAATAACAACTAAGTTTAA AACTTGAACAACACAAAACAAGTTAAATTTGAAATTACTTTCATGAAATCACTGTCATAA AGGGTTGATAAAAAGTAGTCCCTATACAGCATATGTATTTGGTGCTCCTTTGTACCAATA TGTATGTGTTTAAATAAATAAATAAACACAGCAACTAGCTAATACCTGATTAGGTATGAC AAACGAATAACTAAAAATCTCGCTTGAAACTTAGTCTTACCGATCGAAAACTAAGGTTAC TAAACTTGCGCATACCTGACTGGGGTGGAGGCGGAATTGGTGGGAGTGGAGGAACGAATG AGTCTTGTTCTATCTGTACGACTGACGGTTGACTTTC



consensusID : consensus_10627#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence
                              [CATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTATCTTCTTCAGAAACTTTTGTNTCAGCTTCAGCATCGAATGACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCCAGAGTCGTCACTATCTTCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGTATGTGAGTCACTTGTAAGTGGATTGTTAGAAGACGCCTCCAAGATTGCGTACC]

[-] EMBL CD144480             [CATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTATCTTCTTCAGAAACTTTTGTNTCAGCTTCAGCATCGAATGACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCCAGAGTCGTCACTATCTTCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGTATGTGAGTCACTTGTAAGTGGATTGTTAGAAGACGCCTCCAAGATTGCGTACC]


>consensus_10627#4 CATACAAGCGAGCTTGGCCCAATCCAAAAGTTTGTTATCTTCTTCAGAAACTTTTGTNTC AGCTTCAGCATCGAATGACAACAATGAATCTTGTTTTTCACTATGTGTCTCATCCTGGCC AGAGTCGTCACTATCTTCAACACCGCCATATTCTGCAACCAAACTGGCGGATTCAGGTGT ATGTGAGTCACTTGTAAGTGGATTGTTAGAAGACGCCTCCAAGATTGCGTACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10627#0      TTATATTTTAGTCAATCAGGGTTTTTCAACAGATTAGTATGTTGTAGATTAAGATTAATC 60
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ------------------------------------------------------------
consensus_10627#1      ------------------------------------------------------------
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      AATAAACCCAGGAACTGAACAAAAGTGATAAGATTTACAGAAATGCTAGAAGATCAGGTT 120
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ------------------------------------------------------------
consensus_10627#1      ------------------------------------------------------------
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      AAGAAGTAACGTCAGAAAAAACGGTTATATACAAAGAAACAATCCTAGAGTAGTTACTCT 180
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ------------------------------------------------------------
consensus_10627#1      ------------------------------------------------------------
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      AATTCGTGGAATCTGGCAAACATTGCTCGCTTAACGTTATCTTTATAATTGTCTGACTGA 240
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ------------------------------------------------------------
consensus_10627#1      ------------------------------------------------------------
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      GGTCCTCTTTTTGATGTTTTGATTCCAAGACCAACACCAGCTTCTCTAAATTCAGCTTCA 300
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ------------------------------------------------------------
consensus_10627#1      --TTTTTTTTTTTTTTTTATACAAGATTTATATTTTAGTCAATCAGGTTTTTCAACAGAT 58
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      ACTATTTGAGTCCGTCCTTGATTACTTCGACCAAGACCTTGACCAGCTTGCCAGCCCATT 360
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      -------------------------------GCGAACAAATACCACCTTGCCAGCCCATT 29
consensus_10627#1      TAGTATGTTGTAGATTAAGATTAATCAATAAACCCAGGAACTGAACAAAAGTGATAAGAT 118
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      TTTTCCATAAGCCGACTCCCAACGTTGGGAGCTGACTGGGGTGGAGGCGGAATTGGTGGG 420
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      TTTTCCATAAGCCGACTCCCAACGATGGGAGCTGACTGGCGTGGAGGCGGAATTGCCGGG 89
consensus_10627#1      TTACAGAAATGCTAGAAGATCAGGTTAAGAAGTAACGTCAGAAAAAACGGTTATATACAA 178
consensus_10627#3      ------------------------------GGACAAAGAAAACTAAGTCATTACCTTAAA 30
                                                                                   

consensus_10627#0      AGTGGAGGAACGAATGAGTCTTGTTCTATCTGTACGA-CTGACGGTTGACTTTCAACAGA 479
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      AGTGGACGAACGACCGAGTCTTGGTCTATCTGCACGA-CTGACGGGTGACTTTCAACAGA 148
consensus_10627#1      AGAAACAATCCTAGAGTAGTTACTCTAATTCGTGGAATCTGGCAAACATTGCTCGCTTAA 238
consensus_10627#3      GTTGGAGTAACGATGAAAGGCATTTGTAACATAAAAATCTGACCACTGGAATGCTTTATA 90
                                                                                   

consensus_10627#0      CTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACG 539
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      CTTCATTCTAGGTGGCGACGGTATTCCATACTTTTCACGACGCTCCTTGGCTCGATCACG 208
consensus_10627#1      CGTTATCTTTATAATTGTCTGACTGAGGTCCTCTTTTTGATG-TTTTGATTCCAAGACCA 297
consensus_10627#3      CTTCACTTTATATAGCA--------CAGTCTTCAACGCATTGGTTCTTGATATAACTTGA 142
                                                                                   

consensus_10627#0      ATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCG--CA 597
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      ATATTGACCGGATGCGCTTGGCCGACTACTAACTTGTCTAGATGCTACTGATTTCG--CA 266
consensus_10627#1      ACACCAGCTTCTCTAAATTCAGCTTCAACTATTTGAGTCCGTCCTTGATTACTTCGACCA 357
consensus_10627#3      GCAG----TTGATGCATCTCAG-GAGAGGTAATTTTACCAGACTTAGGGGATGAGGGTCA 197
                                                                                   

consensus_10627#0      TGATTACTGGCCGTTTG--AGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTT 655
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      TGATTACTGGCCGTTTG--AGCACCAATCTGCATTAACGATGCTATTGAAAGGGAATTTT 324
consensus_10627#1      AGACCTTGACCAGCTTGCCAGCCCATTTTTTCCATAAGCCGACTCCCAACGTTGGGAGCT 417
consensus_10627#3      CAATT-TGTGCTGTTAGTAAACC---TTTAATAACAACTAAGTTTAAAACTTGAACAACA 253
                                                                                   

consensus_10627#0      TAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGA--AT 713
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      TAGGTGAATTAACAGCTGTTGAAGCTTCTTGATTTTGTACAGGGGTTGGAACAGGA--AT 382
consensus_10627#1      AAAAAAAATTTATGAGAGTT-AGATTCAGTGAAGTAACATGGTTGTTATGAAAAGC--AT 474
consensus_10627#3      CAAAACAAGTTA----AATTTGAAATTACTTTCATGAAATCACTGTCATAAAGGGTTGAT 309
                                                                                   

consensus_10627#0      TGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAA 773
consensus_10627#4      ------------------------------------------------------------
consensus_10627#2      TGCTGGTAAGCCATATTTTCCGCGTAATTTATTCAAATTTTCATAATGGAGGCCAGAAAA 442
consensus_10627#1      CTTCATAAGTTTCTGAAATTTACGTTAGACAGAACCATTTTTGTATAAAATGACAAAGAA 534
consensus_10627#3      AAAAAGTAGTCCCTATACAGCATATGTATTTGGTGCTCCTTTGTACCAAT--ATGTATGT 367
                                                                                   

consensus_10627#0      TGCTCTATGTTTTTGAAGA-GTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAG 832
consensus_10627#4      ----------------------------------------------------CATACAAG 8
consensus_10627#2      TGCTCTATGTTTTTGAAGA-GTTGCTGCATCTTTGAAACCGCGGGAGCACAACATACAAG 501
consensus_10627#1      ATGGAAATATTCTAGATTATANGGATACAAACAATCGAAGAAAGGAAAATAATAAATATA 594
consensus_10627#3      GTTTAAATAAATAAATAAACACAGCAACTAGCTAATACCTGATTAGGTATGACAAACGAA 427
                                                                            * *    

consensus_10627#0      CGAGCTTGGCCCAA-------TCCAAAAGTTTGTTTTCTTCTTCAGAAACTTT--TGTTT 883
consensus_10627#4      CGAGCTTGGCCCAA-------TCCAAAAGTTTGTTATCTTCTTCAGAAACTTT--TGTNT 59
consensus_10627#2      CGAGCTTGGCCCAA-------TCCAAAAGTTTGTTTTCTTCTTCAGGAACTTT--TGTTT 552
consensus_10627#1      TGTAACTAAACAAAAGATTATTTTAAATGGTCCACTCCTAATTCCAAGTCTCT--TAACT 652
consensus_10627#3      TAACTAAAAATCTCG------CTTGAAACTTAGTCTTACCGATCGAAAACTAAGGTTACT 481
                                                **   *           **     **    *   *

consensus_10627#0      CAGCTTCAGCATCGA-ATGACAACAATG-AATCTTGTTTTTC--ACTATGTGTCTCATCC 939
consensus_10627#4      CAGCTTCAGCATCGA-ATGACAACAATG-AATCTTGTTTTTC--ACTATGTGTCTCATCC 115
consensus_10627#2      CAGCTTCAGCATCGA-ATGACAACATTATAAGCTCGTTATTT--CGCAGATGTCT-AGGT 608
consensus_10627#1      ATCTTAAAACATTTTTATTTCATGAACACATACTTTTTTCTTGAATCACATCTTTGATGC 712
consensus_10627#3      AAACTTGCGCATACC--TGACTGGGGTGGAGGCGGAATTGGT-----GGGAGTGGAGGAA 534
                           *    ***     *  *        *  *    *              *       

consensus_10627#0      TGGCCAGAG-------TCGTCACTATCTTCAACAC------CGCCATATTCTGCAACCAA 986
consensus_10627#4      TGGCCAGAG-------TCGTCACTATCTTCAACAC------CGCCATATTCTGCAACCAA 162
consensus_10627#2      CGTCCTACT-------TTGCTGCTGCCCTGATCATGT----TACTATTTACTTTTTGTAT 657
consensus_10627#1      CTATTGATTCTTGCTATCATTAATACTTTTAGTACATGTACTACTCTGGCATTTCGCTGT 772
consensus_10627#3      CGAATGAGTC------TTGTT-CTATCTGTACGAC-----TGACGGTTGACTTTC----- 577
                                       *      *      *  *         *  *    *        

consensus_10627#0      ACTGGCGGATTCAGGTGTATGAGAGTCACTTGTAAGTGGATTGTTAGCAGACGGCCCTCG 1046
consensus_10627#4      ACTGGCGGATTCAGGTGTATGTGAGTCACTTGTAAGTGGATTGTTAGAAGACGCCTCCAA 222
consensus_10627#2      ATCCATTNTGTTGAG-ATATTCAAGTCAACAGCTTGNTGGNTGTA--------------- 701
consensus_10627#1      GCTGGTTGATAT-GGTGTAGCAAATTCAGCCGATAAACACGTGTCAAATTCTTCGTTATG 831
consensus_10627#3      ------------------------------------------------------------
                                                                                   

consensus_10627#0      TGCCGAATCTGGC-------------- 1059
consensus_10627#4      GATTGCGTACC---------------- 233
consensus_10627#2      ---------------------------
consensus_10627#1      TATGACTGACTGAATGAGTTTGTCGCC 858
consensus_10627#3      ---------------------------
                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)