These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1130 fasta sequence [CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTTCATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCCTGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTACCAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCACCAATTNTGAGTTATTATTGATCACATTTCGTTATCAAGTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGGAAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCTACGGGGATATTCCATACATTTCTAAGCCCGAAAAGAAACCCCATATTAATCTTAGTAGAGAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAATT] [-] EMBL CD082456 [CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTTCATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCCTGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTACCAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCG ] [+] EMBL CD068428 [ gGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGCTAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGATGTGTGTTACGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACCCAGTAA ] [+] EMBL BG932416 [ GAGGTAATAGCGGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCT ] [-] EMBL CD096087 [ AAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCACCAATTNTGAGTTATTATTGATCACATTTCGTTATCAAGTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGGAAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCTACGGGGATATTCCATACATTTCTAAGCCCGAAAAGAAACCCCATATTAATCTTAGTAGAGAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAATT] consensusID : consensus_10654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1039 fasta sequence [CTCCGAGGCCAAAATTCGGCACGAGGCAAATNTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCA-CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGTCGGANTCCATTTAAAAAAAAAAAAAAAAA] [+] EMBL CD079707 [CTCCGAGGCCAAAATTCGGCACGAGGCAAATNTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCA CCTn ] [-] EMBL CD073965 [ TAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGCCAGCATATATGGCC CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCGTTTCTTTTTCATTTAATAAAACG ] [-] EMBL CD076054 [ GGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGCCAGCATATATGGCC CCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACG ] [-] EMBL AI395463 [ AGGAT ATTATGATATTTAAATACATGTAAATTGACAGCATATATGGCACCCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTTGTGTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTGCATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGATGAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCTTTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGTCGGANTCCATTTAAAAAAAAAAAAAAAAA] consensusID : consensus_10654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence [CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCACTGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATTTGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTTCAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTTGTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTATTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACACTTAC-AGTAAATTCACATANACTGCATTAAACTNTTTCACGGTTATTTTTAATATTATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTTACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC] [+] EMBL CD080557 [CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCACTGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATTTGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTTCAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTTGTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTATTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACACTTAC AGTAAATTCACATANACTGCATTAAACTNTTTCA ] [+] EMBL CD083312 [ cgaggCAGAAATAAATTATCGTCTCTGTCAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCTATTCATAGTTTACTTTAATTGTTTTGATTTTATTCCATGTATGCCACCATAGTGTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAAGATTCGCGTAATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAGCTTATCAATTCATAAAAACACAC TACAAGTAAATTCACATAAACTGCATTAAACTTTTTCACGGTTATTTTTAATATTATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTTACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC] consensusID : consensus_10654#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 627 fasta sequence [GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA-GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC-GGTTAGGAATGGTATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGAGCAATAGTAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAATGAGGATAGCAATCGGGAAGAGACTCTCATCGGTCANATCTGCAGTCATCTTTCTG] [+] EMBL CD146859 [GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGACAGCGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCTATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGTTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGGACCTTATCCTCGTCGTA ] [+] EMBL CD095626 [GGTAACAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGA ] [-] EMBL CD171567 [ GTACNAGGTCCGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTT CCCGAGTCGGTTAGCAGCTGCACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGCACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGT ] [+] EMBL CD116341 [ TGAAGGCGCGACGCAGTTCTACACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAGCCCACAAGCAGAAGTGCGGCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC GGTTAGGAATGGTATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGAGCAATAGTAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAATGAGGATAGCAATCGGGAAGAGACTCTCATCGGTCANATCTGCAGTCATCTTTCTG] [+] EMBL CD200353 [ GCTAGTAAACCAGTCACCTGTCGCCAAACGCTTAATCAGTGGGAGAAAGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGGTTAGGAATGGGATCAATTCTGTTCTTGTCCTCTCTGGACCAAGCGCGAGA ] [-] EMBL CD125630 [ AGGTGCAA GTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTC GGTTAGGAATGGTATCAATTCTGTTCTTGTC ] consensusID : consensus_10654#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [CTCGACGGCAAGATGGCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAGCATATATGGCAA] [+] EMBL CD083379 [CTCGACGGCAAGATGGCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATCCCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAACATTTACTTCCTACGATAGTTCAACTGGGTCAAGATCCTGTACCAAATGTTCGTTTTAAAGTTGGTCAAATTTTGGGCAAAATTGGTCATCTTCTGGATGCATCAACTATACAGACATTTGTTAAACCAACTTTAGAAAAACTGGGCTCTGATGCAGATCCAGATGTTGTTTATTATGCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCCATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAGCATATATGGCAA] consensusID : consensus_10654#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TTTAGCTCCGCTGCTTGGCAAAGAGAATACATTAGAACATCTTCTTCCATTGCTGTTGATTCAATTAAAGGACGAAAATCCAGATGTCCGTTTGAATATTATATCCAATTTAGAGTGTGTAAATCAAATTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGACTAGATTGGGCCAGTTCTCAA] [+] EMBL CD180585 [TTTAGCTCCGCTGCTTGGCAAAGAGAATACATTAGAACATCTTCTTCCATTGCTGTTGATTCAATTAAAGGACGAAAATCCAGATGTCCGTTTGAATATTATATCCAATTTAGAGTGTGTAAATCAAATTATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGATACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTTGGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGATGTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGACTAGATTGGGCCAGTTCTCAA] consensusID : consensus_10654#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGACAAGACTGAGCTTCACCTAGTTGGTGAAGGGATGCCAAACAAATCATTCGACGAAGATAATTGGGATCGTAAGAGAGTTGTATGAGACGTGGGATGATTTGAGAACTGGCCCAATCTACTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAAT] [+] EMBL CD096687 [TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGACAAGACTGAGCTTCACCTAGTTGGTGAAGGGATGCCAAACAAATCATTCGACGAAGATAATTGGGATCGTAAGAGAGTTGTATGAGACGTGGGATGATTTGAGAACTGGCCCAATCTACTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAAGGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAATTGTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATGGTATCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10654#0 CGTTTTTACCTGCAAATTAGTTTCACCAACCATTTCCCGAATGATAGGTAACAATGTTTT 60 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ------------------------------------------------------------ consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 CATAATCACAGATTCCCGAATATCAGGGGCTAGAGACGAAGCAAACTTCTTCAGTTTGCC 120 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ------------------------------------------------------------ consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 TGCAGCCGCTGCACGAACTTCACCTTCTGGATCTTTGAGCAAAATCTGGTAAACGTCTAC 180 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ------------------------------------------------------------ consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 CAAGTGCTGTCCAGCAAGTTGGGGTTTTACTGCAGCCTGTAGATCAGTAATGTGGTCAGC 240 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ------------------------------------------------------------ consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 TAATTGATAACGGACTCGCCAAGATTTATCTTCTGCGGCTCCCCGTATAAGAGGAATGAT 300 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ---------------------------CTCCGAGGCCAAAATTCGGCACGAGGCAAATNT 33 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 GTGTGTTAAGACATCTTCAGTAGGAAGAACTTCAGCAAAATCTACTGACGCATTCACACC 360 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ATGGGAATTACCCAACTTAGTCAAAGTCTACTTCCTGCCATTGTTGAATTGGCCAGTGAT 93 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 CAGTAATCGTACAGAGTCCTGATCATCTTGGGAAAGAGGAGGTAATAGCGGTAACAGGTC 420 consensus_10654#3 -------------------------------------------------GGTAACAGGTC 11 consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ACAAAGTGGCGTGTTCGTCTAGCAATAATTGAGTATATGCCACTATTAGCCAGTCAACTT 153 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------CCTCGAGCCAANAATTCGGCACGAGGCCAACGCTATTTCTAAAAGCAC 48 consensus_10654#0 CGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGC 480 consensus_10654#3 CGAACGTAACGCATCTAGTTCCAAACAACGAGCTAGTTCCCCGAGTCGGTTAGCAGCTGC 71 consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 GGTTTGCAATGTTTTAACGAGCGACTCACAAATTTATGCTTGGGTTGGCTAGTAGACGAT 213 consensus_10654#4 ------------------------------------------------CTCGACGGCAAG 12 consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 TGGTAATTAAATAAGCAACTAAATTAAATATAGGCATTTAAATAGTGGTTCGGTGACATT 108 consensus_10654#0 ACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGC 540 consensus_10654#3 ACGTCTGACCATAGGAGTGTCGTCAGTGCAAAGCTGTTTGAAGGCGCGACGCAGTTCTGC 131 consensus_10654#6 ---TCGTAGGAAGTAAATGTTTCTGCAATAACTCCGATCGA---CAAGACTGAGCTTCAC 54 consensus_10654#1 GTATACGCTGTGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTT-TG- 271 consensus_10654#4 ATG-GCACGAGGCGTGAAGCAGCTGTAACAAATTTACGAAAACTTATGGATCAGTT-TG- 69 consensus_10654#5 --------------------------------------------TTTAGCTCCGCTGCT- 15 consensus_10654#2 TGGCAGGTTTCACTGTAGTCAATTATTACCTATAAACTGCTAATTTAGTTTTGGTCATTT 168 * consensus_10654#0 ACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAG----CCCACAAGCAGAAG 596 consensus_10654#3 ACGGACAGCAGTAGAAGACTGTCGATAAATCACGCTAAACAG----CCCACAAGCAGAAG 187 consensus_10654#6 CTAGTTGGTGAAGGGATGCCA--AACAAATCAT-------------TCGACGAAGATAAT 99 consensus_10654#1 -----GAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCT----CATACAACTCTCTT 322 consensus_10654#4 -----GAGTAGATTGGGCCAGTTCTCAAATCATCCCACGTCT----CATACAACTCTCTT 120 consensus_10654#5 -----TGGCAAAGAGAATACATTAGAACATCTTCTTCCATTG----CTGTTGATTCAATT 66 consensus_10654#2 CAGTTTTCTAGACCAAGATTATTTTACTGCCTTCCTAAACCGAAAGTTTTCGATACAGTT 228 * * consensus_10654#0 TGCGGCTAGTAAACCA------GTCACCTGT--CGC-CAAACGCTTAATCAGTGGGAGAA 647 consensus_10654#3 TGCGGCTAGTAAACCA------GTCACCTGT--CGC-CAAACGCTTAATCAGTGGGAGAA 238 consensus_10654#6 TG-GGATCGTAAGAGA------GTTGTATGAGACGT-GGGATGATTTGAGAACTGGCCCA 151 consensus_10654#1 ACGATCCCAATTATCTT----CGTCGAATGATTTGT-TTGGCATCCCTTCACCAACTAGG 377 consensus_10654#4 ACGATCCCAATTATCTT----CGTCGAATGATTTGT-TTGGCATCCCTTCACCAACTAGG 175 consensus_10654#5 A-AAGGACGAAAATC---------CAGATG-TCCGT-TTGA-ATATTATATCCAATTTAG 113 consensus_10654#2 GTCTGAACTCCTACTTCATGGCGTTACAGTTTTCGTGTTAATGTCAAATGATGTTTGTTA 288 * consensus_10654#0 AGTGAGTTTCCAAATCCACCAATTNTGAGTTA----TTATTGATCACATTTCGTTATCAA 703 consensus_10654#3 AGTGAGTTTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAG 298 consensus_10654#6 ATCTA--CTCCAAATCCTTGGGTGAGAAACTAGGTGCAAGTGCTCGCAACGTCTCCACAG 209 consensus_10654#1 TGAAG----CTCAGTCTTGTCGATCGGAGTTAT-TGCAGA-----AACATTTACTTCCTA 427 consensus_10654#4 TGAAG----CTCAGTCTTGTCGATCGGAGTTAT-TGCAGA-----AACATTTACTTCCTA 225 consensus_10654#5 AGTGT----GTAAATCAAATT-ATGGGAATTAC-CCAACTTAGTCAAAGTCTACTTCCTG 167 consensus_10654#2 TTGACGTATTTGAATTCAGAGACCAGAACATCTCTTTAGCTCTTCAGAAATAAATTATCG 348 * * * * consensus_10654#0 GTCTGGTGTAGATACGAGTAGCAACGCCTGCAGACTTCAATATGTTGGAGGGATTTGAGG 763 consensus_10654#3 CTTTATCCCGCACA---ACCGTTTCTTCAGCAGA-TGCAAGTCCTTCCAAGGGTGGTAGA 354 consensus_10654#6 CTTTATCCCGCACA---ACCGTTTCTTCAGCAGA-TGCAAGTCCTTCCAAGGGTGGTAGA 265 consensus_10654#1 CGATAGTTCAACTGGGTCAAGATCCTGTACCAAA----TGTTCGTTTTAAAGTTGGTCAA 483 consensus_10654#4 CGATAGTTCAACTGGGTCAAGATCCTGTACCAAA----TGTTCGTTTTAAAGTTGGTCAA 281 consensus_10654#5 CCATTGTTGAATTGGCCAGTGATACAAAGTGGCG----TGTTCGTCT-AGCAATAATTGA 222 consensus_10654#2 TCTCTGT-CAGTTGATAAGTGTTTAACTGTAACAAATCATTTGGTTTTGGAGGTTATTCT 407 * * * consensus_10654#0 AAACAATTACGTGATTTGCATAAAAACGAGAATCCCAGATATTTACTACAATGACATGCT 823 consensus_10654#3 AGACAATG----GACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAAT-TGTT 409 consensus_10654#6 AGACAATG----GACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAAT-TGTT 320 consensus_10654#1 ATTTTG------GGCAAAATTGG--TCATCTTCTGGATGCATCAACTATACAGACATTTG 535 consensus_10654#4 ATTTTG------GGCAAAATTGG--TCATCTTCTGGATGCATCAACTATACAGACATTTG 333 consensus_10654#5 GTATAT------GCCACTATTAG--CCA------------GTCAACTTGGTTTGCAATGT 262 consensus_10654#2 ATTCATA-----GTTTACTTTAA--TTGTTTTGATTTTATTCCATGTATGCCACCATAGT 460 * * consensus_10654#0 ACGGGGATATTCCATACATTTCTA-AGCCCGAAAAGAAACCCCATATTAATCTTAGTAGA 882 consensus_10654#3 -TGGCCAT-CTCCCTAAGTACCTC-ATCCTCG-------TCGTATAT-GGTGTCGGTTAG 458 consensus_10654#6 -TGGCCAT-CTCCCTAAGTACCTC-ATCCTCG-------TCGTATAT-GGTGTCGGTTAG 369 consensus_10654#1 TTAAACCAACT-TTAGAAAAACTG-GGCTCTGAT-GCAGATCCAGAT-GTTGTTTATTAT 591 consensus_10654#4 TTAAACCAACT-TTAGAAAAACTG-GGCTCTGAT-GCAGATCCAGAT-GTTGTTTATTAT 389 consensus_10654#5 TTTAACGAGCGACTCACAAATTTA-TGCTTGGGT-TGGCTAGTAGAC-GATGTATACGCT 319 consensus_10654#2 GTCATCTTATTTGTTAAAGAACCACTACATGAAATACTGACTAACATGAATATTCGCGTA 520 * * * * * consensus_10654#0 GAATGAATATCCTGGAATTTGTAGGGAATTCTTGGGTGAGAAACTAGGTGCAAGTGCTCG 942 consensus_10654#3 GAATGG-TATC---AATTCTGTTCTTGTCCTCTCTGGACCAAGC---GCGAGAGCAATAG 511 consensus_10654#6 GAATGG-TATC---AAT------------------------------------------- 382 consensus_10654#1 GCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCC 651 consensus_10654#4 GCCAAAGAATCCAGCGAATTACTTCATCTTTCAGGAAGATGAAAGTCATATCAAGAAGCC 449 consensus_10654#5 GTGCGTGAAGC-----AGCTGTAACAAATTTACGAAAACTTATGGATCAGTTTGGA--CT 372 consensus_10654#2 ATTCAAATATCTGGGAAAATTTACGAGTCTACGGAAAGCTTAG---CTTATCAATTCATA 577 * * consensus_10654#0 CAACGTCTCCACAGCTTTATCCCGCACAACCGTTTCTTCAGCAGATGCAAGTCCTTCCAA 1002 consensus_10654#3 TAGTGAGTTTTCTGATGCTAGCCAGACGAGTTTGCATTTCCTCATTTCTTAACTCATCAA 571 consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 ATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTAAATTGACAG 711 consensus_10654#4 ATACGCGTTTTATTCTATACACAGGATAATTATGATATTTAAATACATGTTAATTGACAG 509 consensus_10654#5 AGATTGGGCCAGTTCTCAA----------------------------------------- 391 consensus_10654#2 AAAACACACTTACAGTAAATTCACATANACTGCATTAAACTNTTTCACGGTTATTTTTAA 637 consensus_10654#0 GGGTGGTAGAAGACAATGGACATATTCAGGTCCTCCAACCAATGGAACAAAGTCTGCCAA 1062 consensus_10654#3 TGAGGATAG----CAATCGGGA-----AGAGACTCTCATCGGTCANATCTG--CAGTCAT 620 consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 CATATATGGCACCTCCCTTTCAGAATAGTGATGCTCTATTAATAAAGTACATGTGGGTTT 771 consensus_10654#4 CATATATGGCAA------------------------------------------------ 521 consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 TAT-TATGATGCCAAGCAGTTAAATATTTGCCAATTATACGTTACTTTCTAAAAAAATTT 696 consensus_10654#0 TT-GTTTGGCCATCTCCCTAAGTACCTCATCCTCGTCGTATATGGTGTCGGTTAGGAATG 1121 consensus_10654#3 CT-TTCTG---------------------------------------------------- 627 consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 GT-GTGTTTGTGGTTCTTGTTCGATTGTGTCTGTGTATGTGCCTTAACGTAAACTAGTTG 830 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ACAGCTCATACAACTCTCTTACGATCCCAATTATCTTCGTCGAATGATTTGTTTGGCATC 756 consensus_10654#0 GTATCAATT--------------------------------------------------- 1130 consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 CATCTGTTCGTATTAGTTATTAAATTATGTTTTCATTACTATTTTATTGAAGAAAACGAT 890 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 CCTTCACCAACTAGGTGAAGCTCAGTCTTGTCGATCGGAGTTATTGCAGAAAC------- 809 consensus_10654#0 ------------------------------------------------------------ consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 GAAGGGAGTGCATGTCGTCGTTTAACTTATTTCTTGTCAACTGCATGAAAGTAGCTTGCT 950 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 ------------------------------------------------------------ consensus_10654#3 ------------------------------------------------------------ consensus_10654#6 ------------------------------------------------------------ consensus_10654#1 TTCAGAAAGCAAAACTCAAATATTTGTGATTCGTCTTTTCTTTTTCATTTAATAAAACGT 1010 consensus_10654#4 ------------------------------------------------------------ consensus_10654#5 ------------------------------------------------------------ consensus_10654#2 ------------------------------------------------------------ consensus_10654#0 ----------------------------- consensus_10654#3 ----------------------------- consensus_10654#6 ----------------------------- consensus_10654#1 CGGANTCCATTTAAAAAAAAAAAAAAAAA 1039 consensus_10654#4 ----------------------------- consensus_10654#5 ----------------------------- consensus_10654#2 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||