cluster # 10681

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Schistosoma mansoni
cluster # 10681 cluster # 10681 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10681#0 length = 335 sequences # 6

consensus_10681#1 length = 322 sequences # 13
consensus_10681#2 length = 159 sequences # 1

consensusID : consensus_10681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 335
fasta sequence

                              [CTCGAGGCAGAA-TCGGCACG-GGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG-GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA]

[+] EMBL CD084220             [CTCGAGGCAGAA TCGGCACG GGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT           ]
[+] EMBL CD081406             [    ggcCANAATTCGGCACGAGGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT           ]
[+] EMBL CD078024             [                        GCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAG     ]
[-] EMBL CD075236             [                         CAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTG          ]
[+] EMBL SM931                [                                     GGAGAGTTTGTAGACATTTACATGCCGAGAAGGTGTGCTGTTACTAACAGNGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT           ]
[+] EMBL SM005                [                                                                                                                                  TGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA]




>consensus_10681#0
CTCGAGGCAGAATCGGCACGGGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATAC
CGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGA
TCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACAT
ATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAG
CGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCG
AATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA

consensusID : consensus_10681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 322
fasta sequence

                              [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC-GTTCTCGTAAAGAACCGAATACAAAGCGTTTAATA]

[+] EMBL CD135152             [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTATAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTT    ]
[+] EMBL CD145891             [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ]
[+] EMBL CD187894             [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAAAGATGGCATTGTACCACCAAACTTTTGCGAAAGGACGGTTCTCGTAAAGACCCGAATACAAAGCGTTTAAT ]
[+] EMBL CD144426             [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTAT                                                                                          ]
[+] EMBL CD153696             [ GATTCAAAATTCGAGCAACCACGACGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ]
[+] EMBL CD153660             [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ]
[-] EMBL CD135052             [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTA   ]
[+] EMBL CD136555             [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGANAGAAC GTTCTCGTAAAGAACCGTAT               ]
[-] EMBL CD145941             [  ATTCAAAATTCGTGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGGAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAATA]
[-] EMBL CD126461             [  ATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCT                                                                                                                                ]
[-] EMBL CD095474             [  ATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCCGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTcg                                                                                                                                                                                      ]
[+] EMBL CD161961             [                    CACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCA                                                                                        ]
[-] EMBL CD135161             [                              AACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTAT AATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTA   ]




>consensus_10681#1
AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTAC
ATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATC
CAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAG
ACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATG
TTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGA
ACCGAATACAAAGCGTTTAATA

consensusID : consensus_10681#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG]

[+] EMBL SMAA40582            [TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG]




>consensus_10681#2
TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACAT
TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC
AATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10681#0      -------CTCGAGGCAGAATCGGC-ACGGGGCAGAACGAGGCTGGAGAGTTTGTAGACAT 52
consensus_10681#1      ----AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACAT 56
consensus_10681#2      TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACAT 60
                                  *      * *  * ***  ******************************

consensus_10681#0      TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 112
consensus_10681#1      TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 116
consensus_10681#2      TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 120
                       ************************************************************

consensus_10681#0      AATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAA 172
consensus_10681#1      AATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAA 176
consensus_10681#2      AATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG--------------------- 159
                       ******************************* *******                     

consensus_10681#0      AAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAA 232
consensus_10681#1      AAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAA 236
consensus_10681#2      ------------------------------------------------------------
                                                                                   

consensus_10681#0      TATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTA 292
consensus_10681#1      TATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTA 296
consensus_10681#2      ------------------------------------------------------------
                                                                                   

consensus_10681#0      AAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA 335
consensus_10681#1      AAGAACCGAATACAAAGCGTTTAATA----------------- 322
consensus_10681#2      -------------------------------------------