These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TACCAGACGACTTCGACATTTCGAGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTTTAGGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCAGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAGTTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAACCCAATCTATTCACTACA] [+] EMBL CD137247 [TACCAGACGACTTCGACATTTCGAGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTTTAGGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCAGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAGTTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAACCCAATCTATTCACTACA] consensusID : consensus_107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGCGATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCGAGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCGGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAAT] [-] EMBL CD145866 [TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGCGATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCGAGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTATACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATCAGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCACTGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCGGTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTGGATAGAGAAATATAAATCCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_107#0 ------------------------------------------------------------ consensus_107#1 TTTATTCTTCTTTTCTACAGATTAGGATTTTCGAACACAAAGTGACCTGCTGTATTCGGC 60 consensus_107#0 -------------------------------------TACCAGACGACTTCGACATTTCG 23 consensus_107#1 GATTGGATATCTAACTACAAAATCGTCTTATATATAGTACCAGACGACTTCGACATTTCG 120 *********************** consensus_107#0 AGTTTTTTCTACTGAAATGCCGCGGTATAGTGCCACTGATGAGATCATGGGACTTCGTAT 83 consensus_107#1 AGTTTTCTCTACTGAAATGCCGCGGTATAGTACCACTGATGAGATCATGGGACTTCGTAT 180 ****** ************************ **************************** consensus_107#0 ACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATC 143 consensus_107#1 ACCGGCTTTCAGGACTCGCCTTATGATGAAAAGTTCACCTGACGTGGACTGTGTTTCATC 240 ************************************************************ consensus_107#0 AGATTCTGTTGTTTAG---------------GAAATGTTTGTAAGTGAGCTTGTCTCCAC 188 consensus_107#1 AGATTCTGTTGTATGTCTATCTAAAGCTACTGAAATGTTTGTAAGTGAGCTTGTCTCCAC 300 ************ * ***************************** consensus_107#0 TGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCA 248 consensus_107#1 TGCGATCCGTGGCAATCGATCTGAATTGACTTACAAGGATCTTTCTCGTCTTCAATGTCG 360 *********************************************************** consensus_107#0 GTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTG 308 consensus_107#1 GTTAGATCGCTACAATTTTTTGGCCGATGTCCTACCTCAAAAAATTACTGCTCGAGAGTG 420 ************************************************************ consensus_107#0 GATAGAGAAATATAAATCCGAATTTGATGCATCTTGTCCATAAAACTGCTTACTATCCAG 368 consensus_107#1 GATAGAGAAATATAAATCCGAAT------------------------------------- 443 *********************** consensus_107#0 TTGATTTTTCGTGTTAAATCATTTATCAATGTGAATACGTACTAACCTGTAACTNTTAAA 428 consensus_107#1 ------------------------------------------------------------ consensus_107#0 CCCAATCTATTCACTACA 446 consensus_107#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||