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Schistosoma mansoni
cluster # 10721 cluster # 10721       Sequences # 20       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10721#0 length = 2209 sequences # 16  
consensus_10721#1 length = 312 sequences # 2  
consensus_10721#2 length = 293 sequences # 1  
consensus_10721#3 length = 276 sequences # 1  

consensusID : consensus_10721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 2209
fasta sequence
                              [ACGCTTTGAATCGATTGTCTTTAAAAGGGAGAAAGGTGATGAAAATCAGAATAACACAACTGTCAAATGACAATGATATTTTGGTTAGCATTTTAAAAGAAAAATGAAGGCATCAGAGATCAATAACTGTTTTCTTTCCTTAAACAAAAACAAGCCGAAAGAGATGATGAGGAAATAAGCAACCAGTGTTTGAACACACACAAAAGTAGTGGTAGTTCCAGTAGTGATGCAATACTATAATGGGAGTAATAGTCTCAGTTACATAATAATGATTATCATCTTTAATAAAATGGATTTAAACTACTTGTTTGTTGTTGATGCATCATATTATTTCCAGAGTCATCAATAACAGACCATGCACTAGCAGTATTGATTGGTACCATATGGTTGGGTTGTACTGTTGAGACAGAACCACTAGCAGGATAATATGGTCGAACTTGATAGAACATTGGATTATTCATTGTGTTATGATAAGTTGGACCTGGCAGAGGTGCTGGTGTTAGTGCTAATTGATTCAGTGATGGTTTCAATGACTGGTTAGGTATAAATGGATTACATGATGTACAGGTTACAGATTTCGAACCAACAGTGAATGGATTTGTAGAAGCTGAATTTTTTTCAATCAATTTTTCCAAGTCAACTAATTTCTGATGTTCACCTAAAAAGTCAGCAGGAGTTCGTTTACGTAGGGTCTGTTGTTCTTGCTGTTGTTGTTCTATAGTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAATGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTATTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCGGGCTCCAAGGGTCATCAATAGGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT------ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGTACCTTGGCTTCTTCTTTAGCTTCTTCAGCTCGTCTCCGCCGTTCTTCTCGATCATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTTTGAAGGTGGGGTTCCTTTATCAAAATAGTTAGAACCGGAA-TATCCAATAGGATAGCTACTACGACCAGATGGTTGGACACCATACTTAACTGGTGAATCTCCAGTGGAAGCAGTGGTTCCCAGACCCCCATGCATCAGACGGTCACGTGCTAG-TAAAGCCATTGTACGTTCTTCGTGCAAACGTTCCTCATCTCTAAGAAGCGTACTCAAATGACGAGCTTTCTCACGGACATTCTTACCACGATCCTTCCCATCTTCAACACACTCAAAGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCGACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGGCGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAAAGCCATAACATTATGAGTCTTGTCAGCTATTTCAGCCATTAAAGTGCTGCTAGGACCCCATGGGTCGTTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTATAATTGTGAACGACATTTTCGATATGTCTGTGGATGGGCATGTNTC--AATAAAGACAGTGGAACTTGAGGAACACAATAGTAACACCAATATCAAAACAAGCGCACGCACAGCGATCCCGGAAATCAGTCTTCAGTCTTCAGTAAAAGGATAGTACGTTGATGAACCTGTGTTTATCCTGACAGA]

[+] EMBL CD073323             [ACGCTTTGAATCGATTGTCTTTAAAAGGGAGAAAGGTGATGAAAATCAGAATAACACAACTGTCAAATGACAATGATATTTTGGTTAGCATTTTAAAAGAAAAATGAAGGCATCAGAGATCAATAACTGTTTTCTTTCCTTAAACAAAAACAAGCCGAAAGAGATGATGAGGAAATAAGCAACCAGTGTTTGAACACACACAAAAGTAGTGGTAGTTCCAGTAGTGATGCAATACTATAATGGGAGTAATAGTCTCAGTTACATAATAATGATTATCATCTTTAATAAAATGGATTTAAACTACTTGTTTGTTGTTGATGCATCATATTATTTCCAGAGTCATCAATAACAGACCATGCACTAGCAGTATTGATTGGTACCATATGGTTGGGTTGTACTGTTGAGACAGAACCACTAGCAGGATAATATGGTCGAACTTGATAGAACATTGGATTATTCATTGTGTTATGATAAGTTGGACCTGGCAGAGGTGCTGGTGTTAGTGCTAATTGATTCAGTGATGGTTTCAATGACTGGTTAGGTATAAATGGATTACATGATGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD078863             [                                                                                                                                                                                                                                                                                                                                                          TAACAGACCATGCACTAGCAGTATTGATTGGTACCATATGGTTGGGTTGTACTGTTGAGACAGAACCACTAGCAGGATAATATGGTCGAACTTGATAGAACATTGGATTATTCATTGTGTTATGATAAGTTGGACCTGGCAGAGGTGCTGGTGTTAGTGCTAATTGATTCAGTGATGGTTTCAATGACTGGTTAGGTATAAATGGATTACATGATGTACAGGTTACAGATTTCGAACCAACAGTGAATGGATTTGTAGAAGCTGAATTTTTTTCAATCAATTTTTCCAAGTCAACTAATTTCTGATGTTCACCTAAAAAGTCAGCAGGAGTTCGTTTACGTAGGGTCTGTTGTTCTTGCTGTTGTTGTTCTATAGTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAATGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGTCGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BG931280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTCTGTTGTTCTTGCTGTTGTTGTTCTATAGTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAATGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTATTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCAGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BG930771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aTCTGTTGTTCTTGCTGTTGTTGTTCTATAGTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAATGATCATTAATATTCTTTAAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD138175             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAATGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTATTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCAGGCTCCAAGGATCATCAATAGGGATAAGTGGAAATGTTGACTGTGGTATATTGGTATTATTAAATGATGTGGATGGAGATGATGATGTATTATTATTATCATTATTTAACGGACTGTTCGGAACTGCCAAAGGAGCGGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCAACTAAATTGGATAATCCACCACTANGAGAACAACTTGGTGGTT AAAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD194742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GATCATTAATA TATTTGAAATTCCATCCAAATCAANATGCCCATGTTTATTATTGAGATTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTACTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCGGGCTCCAAGGGTCATCAATAGGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATATTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGTACCTTGGCTTCTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD180577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAATAACTGATTCAGTGTTTGTATTAGAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTACTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCGGGCTCCAAGGGTCATCAATAGGGATAAGTGGAAATGTTGACTGTGGTATGCTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGTACCTTGGCTTCTTCTTTAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BG931181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gattgatggGGGGTCCAAGGGTCATCAATAGGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTAACCTGATTTATCCTTCTGTTCTTCTCGACAACTCTGCTCTATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD068854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGTACCTTGGCTTCTTCTTTAGCTTCTTCAGCTCGTCTCCGCCGTTCTTCTCGATCATGTTCCTCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGTCTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTTTGAAGGTGGGGTTCCTTTATCAAAATAGTTAGAACCGGAA TATCCAATAGGATAGCTACTACGACCAGATGGTTGGACACCATACTTAACTGGTGAATCTCCAGTGGAAGCAGTGGTTCCCAGACCCCCATGCATCAGACGGTCACGTGCTAG TAGAGCCTTTGTACGTTCTTCGTGCAAACGTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD181276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTTACCTGATTTATCCCTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGTACCTTGGCTTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD186233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGATGTGGGTGGAGATGATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD194971             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATAATGTATTATT      ATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGATCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATCGAATAATCCACCACTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCTGAATGTTTACCTGATTTATCCTTCTGTcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD130675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tgGAACTGGAACTATCCAATAGGATAGCTACTACGACCAGATGGTGGGACGCCATGCTTAACTGGTGAATCTCCAGTGGAAGCTGTAGTTCCCAGACACCCATGCATCAGACGGTCACGTGCTAG TAAAGCCATTGTACGTTCTTCGTGCAAACGTTCCTCATCTCTAAGAAGCGTACTCAAATGACGAGCTTTCTCACGGACATTCTTACCACGATCCTTCCCATCTTCAACACACTCAAAGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCGACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGGCGCCAGTTTTT                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD060428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cgCGATCACGTGCTAGCTAAAGCCATTGTACGTTCTTCGTGCAAACGTTCCTCATCTCTAAGAAGCGTACTCAAATGACGAGCTTTCTCACGGACATTCTTACCACGATCCTTCCCATCTTCAACACACTCAAAGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCGACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGGCGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAAAGCCATAACATTATGAGTCTTGTCAGCTATTTCAGCCATTAAAGTGCTGCTAGGACCCCATGGGTCGTTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTATAATTGTGA                                                                                                                                                                                 ]
[+] EMBL CD121544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCGACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGGCGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAGAGCCATAACATTATGAGTCTTGTCAGCTATTTCAGCCATTAAAGTGCTGCTAGGACCCCATGGGTCGCTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTATAATTGTGAACGACATTTTCGATATGTCTGTGGATGGGCATGTNTC  AATAAAGACAGTGGAACTTGAGGAACACAATAGTAACACCAATATCAAAACAAGCGCACGCACAGCGATCCCGGAAATCAGTCTTCAGTCTTCAGTAAAAGGATAGTACGTTGATGAACCTGTGTTTATCCTGACAGA]
[+] EMBL CD121641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCGACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGGCGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAAAGCCATAACATTATGAGTCTTGTCAGCTATTTTAGCCATTAAAGTGCTGCTAGGACCCCATGGGTCGTTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTAAAATTGTGAACGACATTTTTGATATGTCTGTGGATGGGCATGT TCAAAATAAAGACAGTGG                                                                                                                            ]


>consensus_10721#0 ACGCTTTGAATCGATTGTCTTTAAAAGGGAGAAAGGTGATGAAAATCAGAATAACACAAC TGTCAAATGACAATGATATTTTGGTTAGCATTTTAAAAGAAAAATGAAGGCATCAGAGAT CAATAACTGTTTTCTTTCCTTAAACAAAAACAAGCCGAAAGAGATGATGAGGAAATAAGC AACCAGTGTTTGAACACACACAAAAGTAGTGGTAGTTCCAGTAGTGATGCAATACTATAA TGGGAGTAATAGTCTCAGTTACATAATAATGATTATCATCTTTAATAAAATGGATTTAAA CTACTTGTTTGTTGTTGATGCATCATATTATTTCCAGAGTCATCAATAACAGACCATGCA CTAGCAGTATTGATTGGTACCATATGGTTGGGTTGTACTGTTGAGACAGAACCACTAGCA GGATAATATGGTCGAACTTGATAGAACATTGGATTATTCATTGTGTTATGATAAGTTGGA CCTGGCAGAGGTGCTGGTGTTAGTGCTAATTGATTCAGTGATGGTTTCAATGACTGGTTA GGTATAAATGGATTACATGATGTACAGGTTACAGATTTCGAACCAACAGTGAATGGATTT GTAGAAGCTGAATTTTTTTCAATCAATTTTTCCAAGTCAACTAATTTCTGATGTTCACCT AAAAAGTCAGCAGGAGTTCGTTTACGTAGGGTCTGTTGTTCTTGCTGTTGTTGTTCTATA GTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAA TGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGA TTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTA GAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTA TTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCGGGCTCCAAGGGTCATCAATA GGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGAT GATAATGTATTATTATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGA TCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCA CTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCT GAATGTTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGT ACCTTGGCTTCTTCTTTAGCTTCTTCAGCTCGTCTCCGCCGTTCTTCTCGATCATGTTCC TCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGT CTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTTTGAAGGTGGGGTTCCTTTA TCAAAATAGTTAGAACCGGAATATCCAATAGGATAGCTACTACGACCAGATGGTTGGACA CCATACTTAACTGGTGAATCTCCAGTGGAAGCAGTGGTTCCCAGACCCCCATGCATCAGA CGGTCACGTGCTAGTAAAGCCATTGTACGTTCTTCGTGCAAACGTTCCTCATCTCTAAGA AGCGTACTCAAATGACGAGCTTTCTCACGGACATTCTTACCACGATCCTTCCCATCTTCA ACACACTCAAAGTCTCGCAACGTTTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGCG ACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATGG CGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAAA GCCATAACATTATGAGTCTTGTCAGCTATTTCAGCCATTAAAGTGCTGCTAGGACCCCAT GGGTCGTTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTATAATTGTGAACGACA TTTTCGATATGTCTGTGGATGGGCATGTNTCAATAAAGACAGTGGAACTTGAGGAACACA ATAGTAACACCAATATCAAAACAAGCGCACGCACAGCGATCCCGGAAATCAGTCTTCAGT CTTCAGTAAAAGGATAGTACGTTGATGAACCTGTGTTTATCCTGACAGA



consensusID : consensus_10721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 312
fasta sequence
                              [GGGTTCGAATCTTGCGAGGCGGGATCGTGAATGCGCACTGTTGAGAAGTTCCACAATAGGACGAAACGGCCGTCCAGTGCTTCCAGTATTTTCATGGTGTTCTAGCTTCAATTGACCCATGATTTCAACTACATAAAATTACTAAAATCTCCACGAAACCCCCTTCTGACGAAAATAATTATTTGTCAGGAAAAAAGAGTTAGGATTACCATAACTATAGTTTACTCAACAGTGGCTCATTGTTACAATATGGTACTCATGATTACAGAAGAATTTATACAAAACACTTTTTCCGTAACCTTATCACTAAAT]

[+] EMBL CD112304             [GGGTTCGAATCTTGCGAGGCGGGATCGTGAATGCGCACTGTTGAGAAGTTCCACAATAGGACGAAACGGCCGTCCAGTGCTTCCAGTATTTTCATGGTGTTCTAGCTTCAATTGACCCATGATTTCAACTACATAAAATTACTAAAATCTCCACGAAACCCCCTTCTGACGAAAATAATTATTTGTCAGGAAAAAAGAGTTAGGATTACCATAACTATAGTTTACTCAACAGTGGCTCATTGTTACAATATGGTACTCATGATTACAGAAGAATTTATACAAAACACTTTTTCCGTAACCTTATCACTAAA ]
[-] EMBL CD112572             [ GGTTCGAATCTTGCGAGGCGGGATCGTGAATGCGCACTGTTGAGAAGTTCCACAATAGGACGAAACGCCCGTCCAGTGCTTCCAGTATTTTCATGGTGTTCTAGCTTCAATTGACCCACGATTTCAACTACATAAAATTACTAAAATCTCCACGAAACCCCCTTCTGACGAAAATAATTATTTGTCAGGAAAAAAGAGTTAGGATTACCATAACTATAGTTTACTCAACAGTGGCTCATTGTTACAATATGGTACTCATGATTACAGAAGAATTTATACAAAACACTTTTTCCGTAACCTTATCACTAAAT]


>consensus_10721#1 GGGTTCGAATCTTGCGAGGCGGGATCGTGAATGCGCACTGTTGAGAAGTTCCACAATAGG ACGAAACGGCCGTCCAGTGCTTCCAGTATTTTCATGGTGTTCTAGCTTCAATTGACCCAT GATTTCAACTACATAAAATTACTAAAATCTCCACGAAACCCCCTTCTGACGAAAATAATT ATTTGTCAGGAAAAAAGAGTTAGGATTACCATAACTATAGTTTACTCAACAGTGGCTCAT TGTTACAATATGGTACTCATGATTACAGAAGAATTTATACAAAACACTTTTTCCGTAACC TTATCACTAAAT



consensusID : consensus_10721#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [CTCTATTGGGGCGGGTCATTTTACATTTCAACAGACGCGGATTTTCAAACAAGAATATGACGAATCTGGTCCGGGCATAGTACACCGTAAATGCTTATATTGTATAAGGTCGGGCAAGGCATTATAGTATATCTATGCGTCTTCATCGTTTGGCGAAATTACACTGAATTCCCTTATCCTTTTACCCGTCTCCATTCACATATCTCATATTATATGGAATTCAATCTCGATTTAACTAATACATCGACTTTTTAGGAGGACCTCTTGCTACCCGTTTTATAACTACTATTCCA]

[+] EMBL BG930191             [CTCTATTGGGGCGGGTCATTTTACATTTCAACAGACGCGGATTTTCAAACAAGAATATGACGAATCTGGTCCGGGCATAGTACACCGTAAATGCTTATATTGTATAAGGTCGGGCAAGGCATTATAGTATATCTATGCGTCTTCATCGTTTGGCGAAATTACACTGAATTCCCTTATCCTTTTACCCGTCTCCATTCACATATCTCATATTATATGGAATTCAATCTCGATTTAACTAATACATCGACTTTTTAGGAGGACCTCTTGCTACCCGTTTTATAACTACTATTCCA]


>consensus_10721#2 CTCTATTGGGGCGGGTCATTTTACATTTCAACAGACGCGGATTTTCAAACAAGAATATGA CGAATCTGGTCCGGGCATAGTACACCGTAAATGCTTATATTGTATAAGGTCGGGCAAGGC ATTATAGTATATCTATGCGTCTTCATCGTTTGGCGAAATTACACTGAATTCCCTTATCCT TTTACCCGTCTCCATTCACATATCTCATATTATATGGAATTCAATCTCGATTTAACTAAT ACATCGACTTTTTAGGAGGACCTCTTGCTACCCGTTTTATAACTACTATTCCA



consensusID : consensus_10721#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence
                              [AACCCCGGATTAAAGCTCGAAACCCCGGACCTTCAGGTGATGCGCTAGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGT]

[+] EMBL CD191127             [AACCCCGGATTAAAGCTCGAAACCCCGGACCTTCAGGTGATGCGCTAGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGT]


>consensus_10721#3 AACCCCGGATTAAAGCTCGAAACCCCGGACCTTCAGGTGATGCGCTAGTGCGATTAGAGG TGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATC AAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTT GCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCC CAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      ACGCTTTGAATCGATTGTCTTTAAAAGGGAGAAAGGTGATGAAAATCAGAATAACACAAC 60
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TGTCAAATGACAATGATATTTTGGTTAGCATTTTAAAAGAAAAATGAAGGCATCAGAGAT 120
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CAATAACTGTTTTCTTTCCTTAAACAAAAACAAGCCGAAAGAGATGATGAGGAAATAAGC 180
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      AACCAGTGTTTGAACACACACAAAAGTAGTGGTAGTTCCAGTAGTGATGCAATACTATAA 240
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TGGGAGTAATAGTCTCAGTTACATAATAATGATTATCATCTTTAATAAAATGGATTTAAA 300
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CTACTTGTTTGTTGTTGATGCATCATATTATTTCCAGAGTCATCAATAACAGACCATGCA 360
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CTAGCAGTATTGATTGGTACCATATGGTTGGGTTGTACTGTTGAGACAGAACCACTAGCA 420
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GGATAATATGGTCGAACTTGATAGAACATTGGATTATTCATTGTGTTATGATAAGTTGGA 480
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CCTGGCAGAGGTGCTGGTGTTAGTGCTAATTGATTCAGTGATGGTTTCAATGACTGGTTA 540
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GGTATAAATGGATTACATGATGTACAGGTTACAGATTTCGAACCAACAGTGAATGGATTT 600
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GTAGAAGCTGAATTTTTTTCAATCAATTTTTCCAAGTCAACTAATTTCTGATGTTCACCT 660
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      AAAAAGTCAGCAGGAGTTCGTTTACGTAGGGTCTGTTGTTCTTGCTGTTGTTGTTCTATA 720
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GTTGAAGATGTTTGTGCATTTTGAAAAGAGGTGGACTGCTGTTGAAACTGTTGCGGAAAA 780
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TGATCATTAATATTCTTTGAAATTCCATTTAAATCAAAATGCCCATTGTTATTATTGAGA 840
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TTACTACCATTGTTAGTATGATGATGTTGGCTAGAAATAACTGATTCAGTGTTTGTATTA 900
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GAAGTGGACGGTAAAGTAGCACCTAAAGTTGATTCCAAATTCCATATTTCATCAGAAGTA 960
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TTTGTTGTAGAATATGTTGGAATATTTGGGTGATTTTTCGGGCTCCAAGGGTCATCAATA 1020
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GGGATAAGTGGAAATGTTGACTGTGGTATACTGGTATTATTAAATGATGTGGGTGGAGAT 1080
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GATAATGTATTATTATTATTTAACGAATTGCTCGGAACTGCTAAAGGAGCAGACCATGGA 1140
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TCCGGTAAATGAGCTGGTGCAACTGACAAAGAAGTATCGACTAAATTGAATAATCCACCA 1200
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CTAGGAGCACAACTTGGTGGTTCAAAGGCACTACTAGATCCAGAAGGAATATTGGAAGCT 1260
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      GAATGTTTACCTGATTTATCCTTCTGTTCTTCTCGACGACTCTGCTCTATGACCATTTGT 1320
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      ACCTTGGCTTCTTCTTTAGCTTCTTCAGCTCGTCTCCGCCGTTCTTCTCGATCATGTTCC 1380
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TCTTTACTGATAGCCAAGGCAAGTTGAAGATGTAATTGTTCTTCTCCAGCAGACTGAGGT 1440
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CTAACGGATTCTAGTTCAGTTGCGGCATGAGAAACAGATTTTGAAGGTGGGGTTCCTTTA 1500
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      TCAAAATAGTTAGAACCGGAATATCCAATAGGATAGCTACTACGACCAGATGGTTGGACA 1560
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ----------------------------------------------------GGGTTCGA 8
consensus_10721#0      CCATACTTAACTGGTGAATCTCCAGTGGAAGCAGTGGTTCCCAGACCCCCATGCATCAGA 1620
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ATCTTGCGAGGCGGGATCGTGAATGCGCACTGTTG----AGAAGTTCCACAATAGGACGA 64
consensus_10721#0      CGGTCACGTGCTAGTAAAGCCATTGTACGTTCTTCGTGCAAACGTTCCTCATCTCTAAGA 1680
consensus_10721#2      CTCTATTGGGGCGG----GTCATTTTACATTTCAA---CAGACGCGGATTTTCAAACAAG 53
consensus_10721#3      --------------------AACCCCGGATTAAAGCTCGAAACCCCGGACCTTCAGGTGA 40
                                            *        *        * *                  

consensus_10721#1      AACGGCC------GTCCAGTGCTTCCA---GTATTTTCATGGTG-----TTCTAGCTTCA 110
consensus_10721#0      AGCGTACTCAAATGACGAGCTTTCTCACGGACATTCTTACCACGATCCTTCCCATCTTCA 1740
consensus_10721#2      AATAT--------GACGAATCTGGTCC-GGGCATAGT-ACACCG------TAAATGCTTA 97
consensus_10721#3      TGCG-----------CTAGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTT 89
                                      * *                                   *   *  

consensus_10721#1      ATTGACCCATGATTTC--AAC----TACATAAAATTACTAAAATCTC--CACGAAACCCC 162
consensus_10721#0      ACACACTCAAAGTCTCGCAACGT-TTCTATTGAGTGAATATTTTCTCGGCACTGGGTAGC 1799
consensus_10721#2      TATTGTATAAGGTCGGGCAAGGCATTATAGTATATCTATGCGTCTTCATCGTTTGGCGAA 157
consensus_10721#3      GTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACC----TTCGGTTGG 145
                                   *            *  *                 *             

consensus_10721#1      CTTCTGACGAAAATAATTATTTGTCAGGAA----AAAAGAGTTAGG-----ATTACCATA 213
consensus_10721#0      GACCTTATCACTACCAGTCTTTGACAAGTATTCCAAAAGAACAAGAGCCTTATAAACATG 1859
consensus_10721#2      ATTACACTGAATTCCCTTATCCTTTTACCC---------------GTCTCCATTCACATA 202
consensus_10721#3      GGCTCGAAAGGCAAGAAGGCGAAGAAGGTG---------------AAGTTGCCCACAGTG 190
                                                                                 * 

consensus_10721#1      ACTATAGTTTA----CTCAACAGTGGCTCATTGTTACAATATGGTACTCATGATTACAGA 269
consensus_10721#0      GCGCCAGTTTTTGCTCTTATCATTGAGTCTTTTCCAAATCATTTGCATTATTTCTGTAAA 1919
consensus_10721#2      TCTCATATTAT-----ATGGAATTCAATCTCGATTTAACTAATACATCGACTTTTTAGGA 257
consensus_10721#3      TCGGGAGACGTGGATGCTGGT-TTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAA 249
                        *                     *   *         *                *    *

consensus_10721#1      AGAATTTATACAAAACACTTTTT--CCGTAACCTTA-TCACTAAAT-------------- 312
consensus_10721#0      AGCCATAACATTATGAGTCTTGT--CAGCTATTTCAGCCATTAAAGTGCTGCTAGGACCC 1977
consensus_10721#2      GGACCTCTTGCTACCCGTTTTATAACTACTATTCCA------------------------ 293
consensus_10721#3      GGTCGATGTG-GACTCAGGTGAT--CGAGT------------------------------ 276
                        *          *      *  *  *                                  

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      CATGGGTCGTTCGATGTAGCTTCCCGAACTTTTCTTTCAGCATCTGTATAATTGTGAACG 2037
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      ACATTTTCGATATGTCTGTGGATGGGCATGTNTCAATAAAGACAGTGGAACTTGAGGAAC 2097
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ------------------------------------------------------------
consensus_10721#0      ACAATAGTAACACCAATATCAAAACAAGCGCACGCACAGCGATCCCGGAAATCAGTCTTC 2157
consensus_10721#2      ------------------------------------------------------------
consensus_10721#3      ------------------------------------------------------------
                                                                                   

consensus_10721#1      ----------------------------------------------------
consensus_10721#0      AGTCTTCAGTAAAAGGATAGTACGTTGATGAACCTGTGTTTATCCTGACAGA 2209
consensus_10721#2      ----------------------------------------------------
consensus_10721#3      ----------------------------------------------------
                                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)