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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1009 fasta sequence
[AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTTATTAAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATACGATATAATACACCAATGTCACGATACTTGAA-CCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT-CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG]
[+] EMBL CD074230 [AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTTATTAAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATACGATATAATACACCAATGTCACGATACTTGAATCCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGA ]
[+] EMBL BG930447 [ ctccTACAATATAA AATAAT TAATAAT CTT A CCTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAAAATGT ]
[-] EMBL CD130822 [ tccaTGGA ACTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTG ]
[-] EMBL CD134064 [ CACCAACAAACTGTNCCTGAGGGTCACGGCGCAGTCTTATCGAACNCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTA ]
[+] EMBL CD179943 [ ACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTGACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTGTCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGG ]
[-] EMBL CD077408 [ AGTCTTATCGACCCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCT ]
[+] EMBL CD127257 [ ccaatagtAGGTTGTCTCGGATC TATGAAATATCTGATTGGTGTGGTGGGATAGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGA ]
[+] EMBL CD095037 [ GGAAGGAGTCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCAAAGGTGA ]
[-] EMBL CD195282 [ TCGTGATGGTCATCAAAAGGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTG ]
[-] EMBL CD118356 [ AGTAAGAGTCATCGTACTTCGCTCTGCCTACACTTGGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGTACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACTGTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG]
[-] EMBL CD138549 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD164232 [ GGATGCGGGATTCCCGTGGATCTCTGTGGCGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCATACTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCAGTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD138578 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD164228 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD138572 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD164267 [ GGATGCGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGag ]
[-] EMBL CD164265 [ agaGATGCGGGATTCCCGTGGATATCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCAT CTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGAAGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATAT ]
[-] EMBL CD164230 [ TAGAACCTTCAGTGGATACTTCATTTACAGCACGACGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATC ]
consensusID : consensus_10739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence
[GACGAGTTGATTCAGTCCCAATTGAAACGAAATATAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGNGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATGGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT]
[+] EMBL CD141092 [GACGAGTTGATTCAGTCCCAATTGAAACGAAATATAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGN ]
[-] EMBL CD170665 [ TAGTGAGGAATCCATGCTGAAAGAACACCGCAAGCCATAAGGTCCCTCGGTCGATGTCCATGGAACTGTTACTTCCGGTGATCGAAATGCAATACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCGTAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGCAGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACAGTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGATGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATGGAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10739#0 AACAAATTGATTTTATTGTTTTAATTGAATAGGTCATTAAGTTATACCAAAGAGTT-ATT 59
consensus_10739#1 ------------------------------------------------GACGAGTTGATT 12
* ***** ***
consensus_10739#0 AAATGGTATAATGTCTTATAGTTAACTCGATGGTCATCATCCTTTTTTGATCATGTATAC 119
consensus_10739#1 CAGTCCCA-ATTGAAACGAAATATAGTGAGGAATC--CATGCTGAAAGAACACCGCAAGC 69
* * * * ** * * * * ** *** ** * * * *
consensus_10739#0 GATATAATACACCAATGTCACGATACTTGAACCTGTTACTTCCGGTGATCGAAATGCAAT 179
consensus_10739#1 CATAAGGTCCCTCG--GTCGATGTCCATGGAACTGTTACTTCCGGTAATCGAAATGCAAT 127
*** * * * *** * * ** * ************** *************
consensus_10739#0 ACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCG 239
consensus_10739#1 ACCAATGGTCGACCGGCTACTCGATATCCATTTAGTCCTCTAAGTGCCCTATCAGCTTCG 187
************************************************************
consensus_10739#0 TAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGC 299
consensus_10739#1 TAACTTGTTTTGAAATCAACTAACGCCTCACCAACAAACTGTCCTTGAGGGTCACGGCGC 247
************************************************************
consensus_10739#0 AGTCTTATCGAACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGTTGATCAACA 359
consensus_10739#1 AGTCTTATCNGACCCGGAACGAAGTAATAATCCCTCATTATTCCAGCTAGNTGATCAACA 307
********* *************************************** *********
consensus_10739#0 GTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGGGCGACGA 419
consensus_10739#1 GTACATGCGGGTGGAAGATTTCCGACAAAAACAGTAACAAAGTCAGGAACTGNGCGACGA 367
**************************************************** *******
consensus_10739#0 TGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATA 479
consensus_10739#1 TGTGGAAGAGGAACAGGTTGTCTCGGAGCAGATGAAATATCTGATTGGTGTGGTGGGATG 427
***********************************************************
consensus_10739#0 GAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGTGATGGTCATCAAAA 539
consensus_10739#1 GAATGTAAATTATCCACAGGTGGGCGGAACCTACGGAAGGAGTCGT-------------- 473
**********************************************
consensus_10739#0 GGGGCAGGTGCGGAGGGACGGTCATAGTAAGAGTCATCGTACTTCGCTCTGCCTACACTT 599
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 GGGGGACGGCTCTCGAATGGATTCGAAGGTGAAGGACGCTGGCGCTGGTCCCAATGGATG 659
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 CGGGATTCCCGTGGATCTCTGTCACGAGATCTCACAGGTCTGTCAAAGTTAAGTTGTTCA 719
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 TCTTTTGAATCGGCGCCCAAACGGTTCAGCATTTCCTCTCGAGAAATGGCTTCTATATGA 779
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 AGAGATGGGTGTGACTGTTTTGCCTTAGAACCTTCAGTCGATACTTCATTTACAGCACGA 839
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 CGACAGTTGTTTTCACTAATGAAATCAATGAAAGCAATATTGGCATCAGGAGCCAGTCGT 899
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 ACCGCATCTCCAGGAATTAGGATGGATGGAAACAGATTCAGAACTTCAGAATCTTTTACT 959
consensus_10739#1 ------------------------------------------------------------
consensus_10739#0 GTACGAGAAAATCCGCTGACACAAGCACATGTCAAAAAGCCACCAGGTGG 1009
consensus_10739#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||