Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10753 cluster # 10753       Sequences # 21       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10753#0 length = 1691 sequences # 18  
consensus_10753#1 length = 399 sequences # 2  
consensus_10753#2 length = 152 sequences # 1  

consensusID : consensus_10753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 1691
fasta sequence
                              [GGGCCATATTCGGCACGAGGCGGACTCGTGATGATCGGGAGATTGAGTGTGTTTTCTCGGTTAGCTTGTCGAAGGGCTATTTATTTATATCGAGAGTTTTGTGCTGAAGCAGAACTCTTGGTAGAAGATGGGAATAAGTCAAGAAGTTGTAAACCTTTACGCCCTTTATATTTTGATTTTCAAGCATCTACACAAATGGATCCTCGAGTATTAGATGCCATGTTGCCATTTTATATTAGTCATTTTGGTAACCCTCATTCACGCACACATGAGTATGGTTGGTATTGCGAAGAAGCCGTTGAGAAAGCTAGAGGAAATGTAGCTAATCAGATAGGCGCTGACCATAAAGAGATCATTTTCACCAGTGGTGCGACAGAAAGTAATAACCTAGCTGTAAAAGGTGTTGCCAAGTTTTACTACCCAAAGAAGAAGCATATTATAACTACACAGATCGAGCATAAATGTGTATTGGATTCCTGTAGAGTTTTGGAAAACAGTGGGTTTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCAACGTTATCCAGG-CTGTGTAAACTTTAGTTTTGCTTACGTAGAGGGTGAAAGCTTGCTTATGGCTTTAAAGAATGTTGCTTTATCATCTGGCAGTGCATGTACATCTGCTTCACTAGAGCCATCATATGTTTTAAGAGCAATAGGGACTGAAGAAGATTTAGCACATTGTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAAGAGGAAGTTGATTTTACAGTCGCTGAACTAACTAAACATGTTCAACGGCTCCGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTTGAATAGTCGAATAAAAAGACGAAGATTATCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD081647             [GGGCCATATTCGGCACGAGGCGGACTCGTGATGATCGGGAGATTGAGTGTGTTTTCTCGGTTAGCTTGTCGAAGGGCTATTTATTTATATCGAGAGTTTTGTGCTGAAGCAGAACTCTTGGTAGAAGATGGGAATAAGTCAAGAAGTTGTAAACCTTTACGCCCTTTATATTTTGATTTTCAAGCATCTACACAAATGGATCCTCGAGTATTAGATGCCATGTTGCCATTTTATATTAGTCATTTTGGTAACCCTCATTCACGCACACATGAGTATGGTTGGTATTGCGAAGAAGCCGTTGAGAAAGCTAGAGGAAATGTAGCTAATCAGATAGGCGCTGACCATAAAGAGATCATTTTCACCAGTGGTGCGACAGAAAGTAATAACCTAGCTGTAAAAGGTGTTGCCAAGTTTTACTACCCAAAGAAGAAGCATATTATAACTACACAGATCGAGCATAAATGTGTATTGGATTCCTGTAGAGTTTTGGAAAACAGTGGGTTTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BF936350             [                                                                                                                                                                                                                                                                                                                                                                       CACCAGTGGTGCGACAGAAAGTAATAACCTAGCTGTAAAAGGTGTTGCCAAGTTTTACTACCCAAAGAAGAAGCATATTATAACTACACAGATCGAGCATAAATGTGTATTGGATTCCTGTAGAGGTTTGGAAAACAGCGGGTCTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCATCCAATCGAAGAAATTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD084234             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTCGGAAGACAGTGGGTTTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATCTTGGATTCGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTACTAGCGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD163675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATTTACCTGTTCAGAAAAGTGGAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD067662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTTCAGAAAAATGGAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACCCGGGTTAAGGTCTGGTCCTGTTCCTACGGCCTTAGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD113693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAATCTTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD115260             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATTTGGAGGTTCTGGAACGGTCTATCACACTCGAAACGGTCTTAGTGTCTGTCATAGCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCTAAGAAATTGGAAGACTATGTCGAAGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACATCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACATAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAATCCGTTTGGCAAGCGAGAAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCTACGTTATCCAGG CTGTGCAAAgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD161492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGAAGACTATGTCGAAGTAAAGGAGTTCTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGATGTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGGTATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTGAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCAACGTTATCCAGG CTGTGTAAACTTTAGTTTTGCTTACGTAGAGGGTGAAAGCTTGCTTATGGCTTTAAAGAATGTTGCTTTATCATCTGGCAGTGCATGTACATCTGCTTCACTAGAGCCATCATATGTTTTAAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD084253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCTATTAATATTGACCTCATGT CATCAGTGGTCACAAGATATATGGTCCTCAAGGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAATGGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGTTTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCATCGTTATCCAGG CTGTGTAAACTTTAGTTTTGCTTACGTAGAGGGTGAAAGCTTGCTTATGGCTTTAAAGAATGTTGCTTTATCATCTGGCAGTGCATGTACATCTGCTTCACTAGAGCCATCATATGTGTTAAGAGCAATAGGGACTGAAGAAGATTTAGCACATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD155972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTTGTCGGTTTAGGTAAAGCAAGCCGTTTGCCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCCGCTTTAAGTAAACGTTTAATCGATGGCATCACTTCCAAAATTCAACATGTTACCCTCAATGGTGATCCAATTCAACGTTATCCAGGACTGTGTAAACTTTAGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AI068192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATCATATGTTTTAAGAGCAATAGGGACTGAAGAAGATTTAGCACATTGTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAAGAGGAAGTTGATTTTACAGTCGCTGAACTAACTAAACATGTTCAACGGCTCCGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAA                                                                                  ]
[-] EMBL AI067144             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGTATCGGACGATTCACCACTGAAGAGGAAGTTGATTTTACAGTCGCTGAACTAACTAAACATGTTCAACGGCTCCGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTT                                                        ]
[-] EMBL AI395813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCACTGACGAGG AGTTGATTTTACAGTCGCTGAACTAACTAAACATGTTCAACGGCTCCGTG AATGAGTCCCTTGT GGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCTCTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTTGAATAGTCGAATAAAAAGACGAAGATTATCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI068051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGTTGATTTTACAGTCGCTGAACTAACTAAACATGTTCAACGGCTCCGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTT                                                        ]
[-] EMBL AI395609             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGTGGAGAAT GTATCGGAGGG ATCGACAT AAGTCTATACAATGGACACAACACTGATC TTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTTGAATAGTCGAATAAAAAGACGAAGATTATCAAANCTTAAAAAAAAAAAAAAAAA  ]
[-] EMBL AI067003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTT                                                        ]
[-] EMBL AI068317             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTTGTGTGGAAAGCATTT                                                        ]
[-] EMBL AI067009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTGGATCATGAAACTTCAAGAGAGATATGTATTCTGTGTCTTTGAATATTTCAAAATAAGTGATAATTATCCAAAATGTCACATTGTAAATCACTTCTTATTTTAGTTAAGTTCAAAGTAATATATGATTTTGTGTGGAAAGCATTT                                                        ]


>consensus_10753#0 GGGCCATATTCGGCACGAGGCGGACTCGTGATGATCGGGAGATTGAGTGTGTTTTCTCGG TTAGCTTGTCGAAGGGCTATTTATTTATATCGAGAGTTTTGTGCTGAAGCAGAACTCTTG GTAGAAGATGGGAATAAGTCAAGAAGTTGTAAACCTTTACGCCCTTTATATTTTGATTTT CAAGCATCTACACAAATGGATCCTCGAGTATTAGATGCCATGTTGCCATTTTATATTAGT CATTTTGGTAACCCTCATTCACGCACACATGAGTATGGTTGGTATTGCGAAGAAGCCGTT GAGAAAGCTAGAGGAAATGTAGCTAATCAGATAGGCGCTGACCATAAAGAGATCATTTTC ACCAGTGGTGCGACAGAAAGTAATAACCTAGCTGTAAAAGGTGTTGCCAAGTTTTACTAC CCAAAGAAGAAGCATATTATAACTACACAGATCGAGCATAAATGTGTATTGGATTCCTGT AGAGTTTTGGAAAACAGTGGGTTTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATC TTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATA GCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGA AGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGAT GTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAA GGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAAT GGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGT TTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCC GCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAAT GGTGATCCAATTCAACGTTATCCAGGCTGTGTAAACTTTAGTTTTGCTTACGTAGAGGGT GAAAGCTTGCTTATGGCTTTAAAGAATGTTGCTTTATCATCTGGCAGTGCATGTACATCT GCTTCACTAGAGCCATCATATGTTTTAAGAGCAATAGGGACTGAAGAAGATTTAGCACAT TGTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAAGAGGAAGTTGATTTTACAGTC GCTGAACTAACTAAACATGTTCAACGGCTCCGTGAAATGAGTCCCTTGTGGGAAATGGTA TCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTA TATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCT TTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAA ACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTC AAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTTTTT GTGTGGAAAGCATTTGAATAGTCGAATAAAAAGACGAAGATTATCAAAAAAAAAAAAAAA AAAAAAAAAAA



consensusID : consensus_10753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence
                              [ATTTACCACATTCTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAGGAGGAATTGATTTTACAGTCGCTTGAACTTAACTTAAC-TTTTCAACGGCTCCGGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395196             [ATTTACCACATTCTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAGGAGGAATTGATTTTACAGTCGCTTGAACTTAACTTAAC TTTTCAACGGCTCCGGTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395216             [                                                  GAGGAATTGA TTNACAGTCGC TGAAC TAACTAAACATGTTCAACGGCTCC GTGAAATGAGTCCCTTGTGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTATTCAAAATTTCAAAAAAAATTAAA      ]


>consensus_10753#1 ATTTACCACATTCTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAGGAGGAATTGA TTTTACAGTCGCTTGAACTTAACTTAACTTTTCAACGGCTCCGGTGAAATGAGTCCCTTG TGGGAAATGGTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCA TTTGTTTCACTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAA CTTTCATATTCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAG TTGGATCATGAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAG TGATAATTATTCAAAATTTCAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10753#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence
                              [ATCAGTTGGATCATGAAATGTCAAGTGTGATATTTTCACTGCATCTGTGAATATTTCAAAGTACGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATATTAGTTAATTTCAAAGTAATATATATTTGTGTGTGGAAAGCATTT]

[-] EMBL AI067253             [ATCAGTTGGATCATGAAATGTCAAGTGTGATATTTTCACTGCATCTGTGAATATTTCAAAGTACGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATATTAGTTAATTTCAAAGTAATATATATTTGTGTGTGGAAAGCATTT]


>consensus_10753#2 ATCAGTTGGATCATGAAATGTCAAGTGTGATATTTTCACTGCATCTGTGAATATTTCAAA GTACGTGATAATTATTCAAAATTTCACATTGTAAATCACTTCTTATATTAGTTAATTTCA AAGTAATATATATTTGTGTGTGGAAAGCATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10753#0      GGGCCATATTCGGCACGAGGCGGACTCGTGATGATCGGGAGATTGAGTGTGTTTTCTCGG 60
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      TTAGCTTGTCGAAGGGCTATTTATTTATATCGAGAGTTTTGTGCTGAAGCAGAACTCTTG 120
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GTAGAAGATGGGAATAAGTCAAGAAGTTGTAAACCTTTACGCCCTTTATATTTTGATTTT 180
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      CAAGCATCTACACAAATGGATCCTCGAGTATTAGATGCCATGTTGCCATTTTATATTAGT 240
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      CATTTTGGTAACCCTCATTCACGCACACATGAGTATGGTTGGTATTGCGAAGAAGCCGTT 300
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GAGAAAGCTAGAGGAAATGTAGCTAATCAGATAGGCGCTGACCATAAAGAGATCATTTTC 360
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      ACCAGTGGTGCGACAGAAAGTAATAACCTAGCTGTAAAAGGTGTTGCCAAGTTTTACTAC 420
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      CCAAAGAAGAAGCATATTATAACTACACAGATCGAGCATAAATGTGTATTGGATTCCTGT 480
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      AGAGTTTTGGAAAACAGTGGGTTTGATGTTACCTATTTACCTGTTCAGAAAAATGGAATC 540
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      TTGGATTTGGAGGTTCTGGAACGGTCTATCAAACTCGAAACGGTCTTAGTGTCTGTCATA 600
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GCAGTTAATAACGAAATAGGTGTTCTTCAGCCAATCGAAGAAATTGGAAGACTATGTCGA 660
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      AGTAAAGGAGTTTTCTTCCATACTGATGCTGCACAAGCTTTCGGAAAAGTGCCAATTGAT 720
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GTTAATGCTATGAATATTGACCTCATGTCCATCAGTGGTCACAAGATATATGGTCCTCAA 780
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GGCATTGGTGCTCTCTATGTACGTCGCCGACCTAGGGTTCGATTAGAAGCTCAACAAAAT 840
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GGAGGTGGACAGGAACGCGGGTTAAGGTCTGGTACTGTTCCTACGGCCTTAGTTGTCGGT 900
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      TTAGGTGAAGCAAGCCGTTTGGCAAGCGAGGAAATGAAAGATGATTATGAACATGTTTCC 960
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GCTTTAAGTAAACGTTTAATCGATGGTATCACTTCCAAAATTCAACATGTTACCCTCAAT 1020
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GGTGATCCAATTCAACGTTATCCAGGCTGTGTAAACTTTAGTTTTGCTTACGTAGAGGGT 1080
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GAAAGCTTGCTTATGGCTTTAAAGAATGTTGCTTTATCATCTGGCAGTGCATGTACATCT 1140
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GCTTCACTAGAGCCATCATATGTTTTAAGAGCAATAGGGACTGAAGAAGATTTAGCACAT 1200
consensus_10753#1      -------------------------------------------------ATTTACCACAT 11
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      TGTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAAGAGGAAGTTGATTTTACAGTC 1260
consensus_10753#1      TCTAGTATTCGCTTTGGTATCGGACGATTCACCACTGAGGAGGAA-TTGATTTTACAGTC 70
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GCT-GAACT-AACTAAACATGTTCAACGGCTCCG-TGAAATGAGTCCCTTGTGGGAAATG 1317
consensus_10753#1      GCTTGAACTTAACTTAAC-TTTTCAACGGCTCCGGTGAAATGAGTCCCTTGTGGGAAATG 129
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      GTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCA 1377
consensus_10753#1      GTATCGGAGGGAATCGACATAAAGTCTATACAATGGACACAACACTGATCATTTGTTTCA 189
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      CTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATAT 1437
consensus_10753#1      CTATATCAGAAGCTTTATTGTACTTTTTTCCTTCATCTTTACCACTAAAAACTTTCATAT 249
consensus_10753#2      ------------------------------------------------------------
                                                                                   

consensus_10753#0      TCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCAT 1497
consensus_10753#1      TCTTTTGTTTTCTAAGTAAAATTGAAATTTTAACAGACATTCAATTAACAGTTGGATCAT 309
consensus_10753#2      ----------------------------------------------ATCAGTTGGATCAT 14
                                                                     * ************

consensus_10753#0      GAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTA 1557
consensus_10753#1      GAAACTTCAAGAGAGATATTTTTTCTGTTTCTTTGAATATTTCAAAATAAGTGATAATTA 369
consensus_10753#2      GAAATGTCAAGTGTGATATTTTCACTGCATCTGTGAATATTTCAAAGTACGTGATAATTA 74
                       ****  ***** * ********  ***  *** ************* ** **********

consensus_10753#0      TTCAAAATTTCACATTGTAAATCACTTCTTATTTTAGTTAATTTCAAAGTAATATATGTT 1617
consensus_10753#1      TTCAAAATTTCAAAAAAAAAAAAAAAAAAA------------------------------ 399
consensus_10753#2      TTCAAAATTTCACATTGTAAATCACTTCTTATATTAGTTAATTTCAAAGTAATATATATT 134
                       ************ *    ***  *                                    

consensus_10753#0      TTTGTGTGGAAAGCATTTGAATAGTCGAATAAAAAGACGAAGATTATCAAAAAAAAAAAA 1677
consensus_10753#1      ------------------------------------------------------------
consensus_10753#2      TGTGTGTGGAAAGCATTT------------------------------------------ 152
                                                                                   

consensus_10753#0      AAAAAAAAAAAAAA 1691
consensus_10753#1      --------------
consensus_10753#2      --------------
                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)