These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1515 fasta sequence [GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTTGTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACTGATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAACGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACTCAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACG-AAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTGCTGATTCTCATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAAAAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTAGTGAAAATAGTTTCCATCTGCTTAC] [+] EMBL BG931772 [GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTTGTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACTGATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGA ] [-] EMBL CD117007 [ TTAGCATTTTTTGTACGACAGGGAAATTGAGTGTGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTTATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAACGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACTCAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACGAAAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCA ] [-] EMBL CD197778 [ GATCAGAATATGCAACCATTTTACACTCAACAAAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTGGTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGAATGAATATTTCAACG AAATTGCCATACATATTGCATGTTATATAATGTACGATTGAGTGCAGTACAAAATAAAGTACTGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTATAGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAAAGTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAAT ] [+] EMBL CD125003 [ TTTATTTATTTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTGATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTGCTGATTCTCATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAAAAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCAAAAGTATAAAATATTGTCCTATGATCATGTAATTAC ] [-] EMBL CD124945 [ AAAACAAAGACCAAAAGTAATAAATGCTNTGCATCATTTCTGACAAAATATAGTCTAATTTGGAATANAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTAGTGAAAATAGTTTCCATCTGCTTAC] [+] EMBL CD088354 [ CAACCTGCATCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGCAGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGGTATAGATACGTCGTGGATAGTGTGTTATAATAGCACGTTAAGTAGCTGAACAAATGATGCGTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAACAATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTTGCTACTAAATTGATGACACGTTGTTTGTCCGAGC ] [+] EMBL CD088350 [ ccACCTGCATCTTAATCACGAGAAAACTGTTTCCTATCTTCGGAGCTAACTAAGCAAATACATATTTGCAGAACAAGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAAGCGACAAAGGCATTGGGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGATTAAGCACCATCGATATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAAC ] consensusID : consensus_10788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1297 fasta sequence [AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTAATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGCCAAACTTGCGAGTATTTAAACAAGACTCTAAATGCGAGCATTAACTTGCAAATTTGAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACACCATGATGATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGGAAAAATATTAATTGAATGTTTCGATTTTTCTTATTGTCCTAAATAACATAACTGTTTGTTGCAATGGTCAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTC-AAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATT-AGAACATA-TACTACTTAG-TCA-GACCTC-AGTGTCTGGTG-TCTC-CTGA-TGGA-TGCAC-TCAAAATAAAGCCAATATAA] [+] EMBL CD111452 [AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTAATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGCCAAACTTGCGAGTATTTAAACAAGACTCTAAATGCGAGCATTAACTTGCAAATTTGAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACACCATGATGATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGGAAAAATATTAATTGAATGTTTCGATTTTTCTTATTGTCCTAAATAACATAACTGTTTGTTGCAATGGTCAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTCGTTT ] [+] EMBL CD118647 [ CAAGGTCATGCTTTAGGCATTGTGCGGTGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCANAAAAAGTGATTAACANATGACAAGCTCATTNTATTTGCGATACTACGTTGGTCATAAAGGCAAGT ] [+] EMBL CD183514 [ TGCGGCGGAGGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTC ] [+] EMBL CD083631 [ GGCGGGATTTGTCTGGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTTACTCTGCATCTATCCAAAAAACAACATATTTTGTATGTTAATCAGACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATCATTCAAAAAAAGTGATTAAC ] [+] EMBL CD082100 [ ctcgaggaACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATTTTATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTNTCACAACTTC AAAATANGATCCCTGATTGATATTACGAATAGCANGGATCCTGAGGGATT AGAACATA TACTACTTAG TCA GACCTC AGTGTCTGGTG TCTC CTGA TGGA TGCAC TCAAtaagcat ] [+] EMBL CD079107 [ ACTGAAGGGACTTTTTTAAAAAGGTGTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCATATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCTATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTGTAGGTATGGTATAATGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATACTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGA ] [-] EMBL CD075715 [ TAGGTATTTCTAACCTCTATGTATGCAGCACTCAATTTGCTTGATANTACAACTCACCTCACTCCCGTCTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACCCAATGATTCGCAAAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTCAAAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATTAAGAACATATTACTACTTAGTTCAGGACCTCAAGTGTCTGGTGTTCTCGCTGATTGGATTGCACTTCAAAATAAAGCCAATATAA] [-] EMBL CD073561 [ CACTCAATATGCTTGATANTACAACTCACCTCACTCCCGTTTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAAAAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAAGTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAACAACTCCAATTATAAAAATGACACAATGATTCGCAAAGAGGCGTATGTTAGCCCCTCTGTAGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTCATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTTGAAATTGTTTGTGGCGATGAACACATATCTTTCACAACTTCAAAAATAGGATCCCTGATTGATATTACGAATAGCAAGGATCCTGAGGGATTAAGAACATATTACTACTTAGTTCAGGACCTCAAGTGTCTGGTGTTCTCGCTGATTGGATTGCACTTCAAAATAAAGCCAATATAA] consensusID : consensus_10788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [CTCCGATGGCTTCAAACTCCACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGACCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTGCAACTTACTTTCCTCAATCTCCGTAGGAATGTTATCATAAAAGAACGATACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGAACCTCCGAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAACTACACGAGAATTGGGGTATACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAATGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCAGAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAAATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG] [+] EMBL CD094689 [CTCCGATGGCTTCAAACTCCACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGACCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTGCAACTTACTTTCCTCAATCTCCGTAGGAATGTTATCATAAAAGAACGATACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGAACCTCCGAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAACTACACGAGAATTGGGGTATACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAG ] [-] EMBL CD094667 [ CGTAGGAATGTTATCATAATAGAACGACACCTTCCCATTTGGGTGTATTAAACTCGTCATTGTGGCTGTAACATCTGAACCATCAACGTTTATCGAAATATTCCTTTTGACTCCTAATAATTCCTTCTCATCCAAAACTCTAGATTCAGACTTCTTATAGTTTTTTATGTAATTAATAATAGTTCCAATGTAGGACCCTCCAAATTCAAATACATTTTCTCCATGATATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAATGACACGAGAATTGGGGTTTACCATAGTATATGTAACTTATCTTATTTTTAAAACGGTCACTCGGAACTGGTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAATGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCAGAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAAATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG] consensusID : consensus_10788#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [ACCGAAATAANAACTATACAATCCGGAATTGCCGATGGTTGGATGGGATTAGATATTGGTCCAAAAACAATTGAAGAATTCAGTAAAGTGATTAGTCGTGCCAAAACTATTGTTTGGAACGGTCCGATGGGTGTTTTTGAAATGGACAAATTTGCAACAGGAACAAAAGCAGCAATGGATGAAGTACTCNAAGCTACTAAAAATGGTGCTACAACTATTATTGGTGGTGGTGACACCGCAACATGCTGCGCCAAATGGGACACAGAAGAANAANTTAGTCNTGTCAGTACTGGTGGTGGTGCTAGTCCTTGAACTTCTCCCAAGGTAAACAATTAACCCNGAATTGTTGCNCTTACGGATGCNCCTTTAATACNTCCNGGTNAATANTATCCCCCTNACNTNCNTAAATNAATTTAAAATANTGNTNCCNTAACTTTGAATTGTTCCCNATTTN] [+] EMBL AW499465 [ACCGAAATAANAACTATACAATCCGGAATTGCCGATGGTTGGATGGGATTAGATATTGGTCCAAAAACAATTGAAGAATTCAGTAAAGTGATTAGTCGTGCCAAAACTATTGTTTGGAACGGTCCGATGGGTGTTTTTGAAATGGACAAATTTGCAACAGGAACAAAAGCAGCAATGGATGAAGTACTCNAAGCTACTAAAAATGGTGCTACAACTATTATTGGTGGTGGTGACACCGCAACATGCTGCGCCAAATGGGACACAGAAGAANAANTTAGTCNTGTCAGTACTGGTGGTGGTGCTAGTCCTTGAACTTCTCCCAAGGTAAACAATTAACCCNGAATTGTTGCNCTTACGGATGCNCCTTTAATACNTCCNGGTNAATANTATCCCCCTNACNTNCNTAAATNAATTTAAAATANTGNTNCCNTAACTTTGAATTGTTCCCNATTTN] consensusID : consensus_10788#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 453 fasta sequence [ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGACTTCCTTTATGATTACATTCAAATAAATGTTGGTTCAACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA-ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGATATTAACGACGTCCGGTATATAATCAATTATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG] [+] EMBL CD134846 [ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGACTTCCTTTATGATTACATTCAAATAAATGTTGGTTCAACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGAACCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGAAAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGATACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ] [+] EMBL CD192517 [ACCGACAGACTCTAATGTGGTCAGCTACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGATTTCCTTTATGATTACATTCAAATAAATGTTGGTTCGACCAAGTTGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTCCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ] [-] EMBL CD156290 [ ATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGATATTAACGACGTCCGGTATATAATCAATTATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG] [+] EMBL CD134810 [ ctGATACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGA ACGTGATCGTGCCCTAGACAGTCACATATCTGTTCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10788#1 ------------------------------------------------------------ consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GTCTTTGGAATAATTTTTTATTGTGTAATATACAGCACTTTCATGGAACTGGGGAGTTTT 60 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ------------------------------------------------------------ consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GTGCATGTGCATACACACATGTTACTTAGGTGCTTAATGGACTGAAACGAAACGAAAACT 120 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ------------------------------------------------------------ consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GATGCAAATACGCACTGAATATTAAACTTAGCATTTTTTGTACGACAGGGAAATTGAGCG 180 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ----------------AGCGATTAAGCAATATGTTGGATTTTCAGTAGACGGTTGGTCTA 44 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ----------------------------------------CTCCGATGGCTTCAAACTCC 20 consensus_10788#0 TGGCTTATATCTTGCTGAAATTAGTCAGTCATTTGGTTGTCTTATACACCGATGAATTTT 240 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ATCCTCCCTAGATTGGATGCAGATCTTGCAACCAGATGTAGGTATGCGGTACTTTGAAGC 104 consensus_10788#3 -------------------------------------ACCGAAATAANAACTATACAATC 23 consensus_10788#2 ACCAACGTACCACTTTTGATCCATTTTGCTGGAACAGATATCTCAAGAGACTTTGTGGGA 80 consensus_10788#0 ATTGTGATATTATGGGGAACGAATTGTGACTACAACGAGTCAGATGTTAATCATAAACAA 300 consensus_10788#4 -------------------------------------------------------ACCGA 5 consensus_10788#1 CAAACTTGCGAGTATTTAAAC---AAGACTCTAAATGCGAGCATTAAC--TTGCAAATTT 159 consensus_10788#3 CGGAATTGCCGATGGTTGGAT---GGGATTAGATATTGGTCCAAAAACAATTGAAGAATT 80 consensus_10788#2 CCTTCTTCACAACGTATTAGTCCAGAGATTTCCGATTG--CAACTTACTTTCCTCAATCT 138 consensus_10788#0 CGCAACCTAAAAACGAGAGTTTAGTTCGTTTAAGATCAGAATATGCAACCATTTTACACT 360 consensus_10788#4 CAGACTCTAATGTGGTCAGCT----ACGTGGCCTAGGGAAGTAAAAGCATTAGCAGAAGA 61 * * * consensus_10788#1 GAGCAATAATGATGGTGAAAATGAAAGAAATGCAAATAAAATAATAACA---CCATGATG 216 consensus_10788#3 CAGTAA-AGTGAT--TAGTCGTGCCAAAACTATTGTTTGGA-----ACG---GTCCGATG 129 consensus_10788#2 CCGTAGGAATGTT----ATCATAAAAGAACGATACCTTCC-------CA---TTTGGGTG 184 consensus_10788#0 CAACATAACTTATCGGCACAGTGTGTAAACATACAATAGCTAACTTTCGAATTTCTACTG 420 consensus_10788#4 CTTCCTTTATGAT---TACATTCAAATAAATGTTGGTTCAA-----CCAAGTTGAGCGCG 113 * * * ** * * * consensus_10788#1 -ATTAATTATATCATCAGCAGTTTCACATTGCGCTTCATAAGATCTAATAAACAAGG--- 272 consensus_10788#3 -GGTGTTTTTGAAATGGACAAATTTGCAACAGGAA-CAAAAGCAGCAATGGATGAAGTAC 187 consensus_10788#2 TATTAAACTCGTCATTGTGGCTGTAACATC-TGAACCATCAACGTTTATCGAAATATTCC 243 consensus_10788#0 GTTGACTTACATAAGTAGACAGAAAATCTGAAGGTCTACTGTGTCTATAAAACCTACCGA 480 consensus_10788#4 AACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGAGAAGTTCAAGCGTTTA 173 * * consensus_10788#1 --AAAAATATTAATTGAATGTTTCGATTTTTCT-TAT-TGTCCTAAATAACATAACTGTT 328 consensus_10788#3 TCNAAGCTACTAA--AAATGGTGCTACAACTAT-TAT-TGGTGGTGGTGACACCGCAACA 243 consensus_10788#2 TTTTGACTCCTAATAATTCCTTCTCATCCAAAA-CTC-TAGATTCAGACTTCTTATAGTT 301 consensus_10788#0 ATGAATATTTCAACGAAAT--TGCCATACATAT-TGCATGTTATATAATGTACGATTGAG 537 consensus_10788#4 CTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAG 233 * * * * consensus_10788#1 TGTTGCAATGGTCAAGGTCATGCT--TTAGGCATT-GTGCGGTGGAGGCGGGATTTGTCT 385 consensus_10788#3 TGCTGCGCCAAATGGGACACAG------AAGAANA-ANTTAGTCNTGTCAGTACTGGTG- 295 consensus_10788#2 TTTTATG-TAATTAATAAT---------AGTTCCA-ATGTAGGAACCTCCGAATTCAAAT 350 consensus_10788#0 TGCAGTACAAAATAAAGTACAGATAATAAGCTGCATATGCATTGATTTTCCTCTTAGTAT 597 consensus_10788#4 CGTACAGACGAACTTTGTCAAA------AACTCCA-AGATAAGGGTTTTGATGCCACAG- 285 * consensus_10788#1 GGAGTATTAGTCGTTGTTTTTTTTTCGTCATCATATAGTTGAAGGGAGATCTATCAACTT 445 consensus_10788#3 GTGGTGCTAGTCCTTGAACTTCTCCCAAGGT-AAACAATTAACCCNGAATTGTTGCNCTT 354 consensus_10788#2 ACATTTTC--TCCATGA-TATTTGTAAAAATCAATTTGTTCAACGTGAATACCGTAATAA 407 consensus_10788#0 AGATGAATCTAGCTTGATTTATAAACAAATAAAATTTATTTAATCAGACATCAGGACCAA 657 consensus_10788#4 -CTATGCATGGGGATAAACACCAGAAAGAACGTGATCGTGCCCTAGACAGTCACATATCT 344 * * consensus_10788#1 ACTC-TGCATCTATCCAAAAAACAACATATTTTGTATG---TTAATCAGACTGAAGGGAC 501 consensus_10788#3 ACGGATGCNCCT-TTAATACNTCCNGGTNAATANTATC---CCCCTNACN-TNCNTAAAT 409 consensus_10788#2 CTACACGAGAATTGGGGTATACCATAGTATATGTAACT---TATCTTATTTTTAAAACGG 464 consensus_10788#0 A-----GTATCCGTTCATAAACCATTATATGAGGTATCGGATCCACTATAGTTTATTTAT 712 consensus_10788#4 GTTCTCGTTGCCACAGATGTCGCATC-TAGAGGCTTAGATATTAACGACG--TCCGGTAT 401 * * * * consensus_10788#1 TTTTTTAAA---AAGGT--GTTTTCATATCATAAGTGAATTCCTTACGTGAATTATGTCA 556 consensus_10788#3 NAATTTAAA---ATANT--GNTNCCNTAACTTTGAATTGTTCCCNATTTN---------- 454 consensus_10788#2 TCACTCGGA---ACTG---GTTGAGATTGATTACGTTGAATCCTCATTGAATATTTATAA 518 consensus_10788#0 TTGGTTAAATGCACTGACCAATAACAGAGGTTTTAATATATTCTTGTTAATTTCCAACTG 772 consensus_10788#4 ATAATCAATT--ATGACTATCCGTCGCAAACTGAAGATTACATCCACAGAATTG------ 453 * * * consensus_10788#1 TATCTTACACGCTATCGTTTTCACCTTTTTCTCGTAGAAGTAACTCCTAAAACCGTGTCT 616 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 TGAGGAGAATATCGATAAGTATCATTCTCAATAATGACAATCTCATAGTGACTCAAATCA 578 consensus_10788#0 ATAAATATATTTGATTGCAGAAATTTGAAAGTGGTTGGAATTTTGTCCTG--CTGATTCT 830 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ATTTACGGTAGTTGCGTACTGTGGAGATTTTAAATGTCGTTTCTG-TAGGTATGGTATAA 675 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 GAGTTTTTGCAATAGTCATTGCAGTTGAAACGTTTGTAATGCCAAACAAAGATAAGATAA 638 consensus_10788#0 CATAAATGCTATTGTTCAAGTGAAACGATTAAAATACTAATGTTTTTAAAGTTAAACAAA 890 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 TGATACACTTCCAAACCCAATGACAGTTTATGAATCAGTATTTAACGAAGTTAGGTATTT 735 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ATTAGTACCCATAGACTAGGCGAAAAGTTATATCTCATCTTATCGTGTCAAG-------- 690 consensus_10788#0 AAACAAAGACCAAAAGTAATAAATGCTTTGCATCATTTCTGACAAAATATAGTCTAATTT 950 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 CTAACCTCTATGTATGCAGCACTCAATT-TGCTTGATACTACAACTCACCTCACTCCCGT 794 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GGAATAAAATCGAACTGAGTGGATATTAGTGGACGATTCGTATATTTGTTACAACCTACA 1010 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 CTCTTTATGTGTAGGTAGTGACCAGGGAACTGCTGATCGTCCGTCGAGATAATTCAAAAA 854 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 TCTTAATCACGTGAAAACTGGTTCCTATCTTCGTAGCTAACTAGGCAAATACATATTTGC 1070 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 AAGTGATTAACAAATGACAAGCTCATTTTATTTGCGATACTACGTTGGTCATAAAGGCAA 914 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 AGAACAGGTTGTCATTTGTACACTAATTTGCAAAGAAAATCGTAGGTGAAAAAGGTATTG 1130 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 GTTTGGACATGAATTTCTTGAGTTCGAGTTCAGACCTGAAGGCAAGTTAAGATATGCTAA 974 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GGCCCATATTTCGTAAAATTAAATACTAATTAGATATACCAATTGGTTAAGCACCATCGA 1190 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 CAACTCCAATTATAAAAATGACACAATGATTCGCANAGAGGCGTATGTTAGCCCCTCTGT 1034 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 TATTAAATGACATCGAAAGTATAAAATATTGTCCTATGATCATGTAATTACAAACTATGG 1250 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 AGTGGAAGAGCTGAAGAGAATCGTGTTGGAGAGCGATATTATGTCGGAAGATGATGCTTC 1094 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 TATAGATACGTCGTGGATAGTGTGTTATAATAGCACATTAAGTAGCTGAACAAATGATGC 1310 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 ATGGCCAGTACCTGACAGAGTTGGCCGTCAAGAGCTCGAAATTGTTTGTGGCGATGAACA 1154 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GTAGGAGCCTTTTGTTTAACTTTGAAATAAATTAATTCTCGTAGAATTCTATGCATTAAC 1370 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 CATATCTTTCACAACTTCA--AAATAGGATCCCTGATTGATATTACGAATAGCAAGGATC 1212 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 AATAGATTTCATGGTTTTGGTAATCAGGGTAGTTTGGCGAGATTTTTAAAGTCAATAGTT 1430 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 CTGAGGGATTAGAACATATACTACTTAGTCAGACCTCAGTGTCTGGTGTCTCCTGATGGA 1272 consensus_10788#3 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GCTACTAAATTGATGACACGTTGTTTGTCCGAGCAGAATCAAAATACCCTGTTTTAAGTA 1490 consensus_10788#4 ------------------------------------------------------------ consensus_10788#1 TGCACTCAAAATAAAGCCAATATAA 1297 consensus_10788#3 ------------------------- consensus_10788#2 ------------------------- consensus_10788#0 GTGAAAATAGTTTCCATCTGCTTAC 1515 consensus_10788#4 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||