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Schistosoma mansoni
cluster # 10810 cluster # 10810       Sequences # 22       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10810#0 length = 768 sequences # 15  
consensus_10810#1 length = 565 sequences # 4  
consensus_10810#2 length = 444 sequences # 1  
consensus_10810#3 length = 377 sequences # 2  

consensusID : consensus_10810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 768
fasta sequence
                              [TCGAGCCAANAATTCGGCACGAGGCGGCATCAAAGCTTATACGTTACAGTAATATGGTACACATGACAGGCTGGCCGAAAGGTTCGGCCGAAAAGTTCCTTCATTCTACACCTGTTGCTAAAACGATAACGTTATATCCTTTGAAAAGTTATAGTTTTGGCACCAAAGAACCCAATTATGAACGAGATCGGAGTGTTCCTGCTCGATTTCAACGGTTACAGGAGGATTTTGAGAAGTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT-TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTC-ACTTTGCATAC-ACGATTGAGTT-ACATGTAAACGTTTCC-ATGAATATCTTTACGACTCCATATTCTATCAACCAATCCTACCTAACGCA]

[+] EMBL CD082632             [TCGAGCCAANAATTCGGCACGAGGCGGCATCAAAGCTTATACGTTACAGTAATATGGTACACATGACAGGCTGGCCGAAAGGTTCGGCCGAAAAGTTCCTTCATTCTACACCTGTTGCTAAAACGATAACGTTATATCCTTTGAAAAGTTATAGTTTTGGCACCAAAGAACCCAATTATGAACGAGATCGGAGTGTTCCTGCTCGATTTCAACGGTTACAGGAGGATTTTGAGAAGTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTC ACTTTGCATAC ACGATTGAGTT ACATGTAAACGTTTNC ATGAATA                                           ]
[+] EMBL CD080334             [                                         CGTTACAGTAATATGGTACACATGACAGGCTGGCCGAAAGGTTCGGCCGAAAAGTTCCTTCATTCTACACCTGTTGCTAAAACGATAACGTTATATCCTTTGAAAAGTTATAGTTTTGGCACCAAAGAACCCAATTATGAACGAGATCGGAGTGTTCCTGCTCGATTTCAACGGTTACAGGAGGATTTTGAGAAGTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTNTGAC ATGC                                                                                                                                                ]
[+] EMBL CD143262             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGG                                                                                                                                    ]
[+] EMBL CD070110             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGCACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAAACAACACGTTTATTTCTAATTCAACTTCCTGAG AAACATTGTTTGCTGTACCATCGAATTACAAATTA                                                                                                                                                                                    ]
[+] EMBL CD070116             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAGGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAAC AACACGTTTATTTCTAATTCAACTTCCTGAGAAAACAT                                                                                                                                                                                                                 ]
[+] EMBL CD143264             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCACAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGG                                                                                                                                    ]
[+] EMBL CD143408             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGG                                                                                                                                    ]
[+] EMBL CD143373             [                                                                                                                                                                                                                                           GTATGGTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGG                                                                                                                                    ]
[+] EMBL CD122163             [                                                                                                                                                                                                                                                     CGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTTAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAA                                                                                                    ]
[-] EMBL CD122204             [                                                                                                                                                                                                                                                      GTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATCGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAG                                                                                                   ]
[-] EMBL BG932421             [                                                                                                                                                                                                                                                                                   CATGAGCACAACCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTc                                                                                                                                                                                                        ]
[-] EMBL CD070100             [                                                                                                                                                                                                                                                                                           CANCCTACCTCATGTCCTCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGATCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGT                                                                                                                                   ]
[-] EMBL CD070105             [                                                                                                                                                                                                                                                                                                                    CAACTCGGNACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAGAAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGT                                                                                                                                   ]
[+] EMBL CD116704             [                                                                                                                                                                                                                                                                                                                                                                             ATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATC                    ]
[+] EMBL CD117503             [                                                                                                                                                                                                                                                                                                                                                                             ATTGAAGGACTAAAGCGATTATTATCTGAGATATTAGGTCGGACGGATGGCATCCCAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCACCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTT TGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCCTACCTAACGCA]


>consensus_10810#0 TCGAGCCAANAATTCGGCACGAGGCGGCATCAAAGCTTATACGTTACAGTAATATGGTAC ACATGACAGGCTGGCCGAAAGGTTCGGCCGAAAAGTTCCTTCATTCTACACCTGTTGCTA AAACGATAACGTTATATCCTTTGAAAAGTTATAGTTTTGGCACCAAAGAACCCAATTATG AACGAGATCGGAGTGTTCCTGCTCGATTTCAACGGTTACAGGAGGATTTTGAGAAGTATG GTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCC TCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAG AAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCC CAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGACCGAATTTCGAACCAC CTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTC TAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAG CTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTAC CTCAAGTATTAAGTCGCTTCACTTTGCATACACGATTGAGTTACATGTAAACGTTTCCAT GAATATCTTTACGACTCCATATTCTATCAACCAATCCTACCTAACGCA



consensusID : consensus_10810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 565
fasta sequence
                              [GCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTAAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAGTAGTATATAATTCGTCATATTGATTGTCATTATTTTTCTAGATAATAAACTATTG]

[-] EMBL CD076230             [GCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTAAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAGTAGTATATAATTCGTCATATTGATTGTCATTATTTTTCTAGATAATAAACTATTG]
[-] EMBL CD074254             [  TACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTTTATCAACCAATCAAATGATTGATTTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTAAATATATACATACCCCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAAATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAGTAGTATATAATTCGTCATATTGATTGTCATTATTTTTTTAGATAATAAAATAATG]
[-] EMBL CD070065             [                                                                                                    TTACAAATTAGTCGCAGCTNCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTAAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATTGTT                                                                                                                                                                            ]
[-] EMBL CD161813             [                                                                                                                                                                                                                              ACATGTAAACGTTTCCAATGAATATCTATACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCAAAAACCATTTTTTTTCCATTTTTTAAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAACTCGTAAAAAACATATTCTTCGCCGCATTTATTATTTG                                                                                                                                                          ]


>consensus_10810#1 GCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTTCTAA TTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCAGCTC CGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCAATTATTTCTTCCTTACCTC AAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAA TGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAAT CGAAAACCATTTTTTTTCCATTTTTTAAATATATACATACACCATACTACTCATATATTG TTACTTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCT TTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAAT TGTACATAATAACAAATAATATATCATCAGTAGTATATAATTCGTCATATTGATTGTCAT TATTTTTCTAGATAATAAACTATTG



consensusID : consensus_10810#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [TACCCATCGGATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTTAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAGTAGTATATAAAAAAAAAAAAAAAA]

[-] EMBL AI395168             [TACCCATCGGATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGAGCTTATGGTCCATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACAACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCAACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTTAATATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAGTAGTATATAAAAAAAAAAAAAAAA]


>consensus_10810#2 TACCCATCGGATTACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATGCTCGA GCTTATGGTCCATTATTTCTTCCTTACCTCAAGTATTAAGTCGCTTCAACTTTGCATACA ACGATTGAGTTCACATGTAAACGTTTCCAATGAATATCTTTACGACTCCATATTCTATCA ACCAATCAAATGATTGATCTCACTATCAATCGAAAACCATTTTTTTTCCATTTTTTTAAT ATATACATACACCATACTACTCATATATTGTTACTTTGTTAAAGTCGTAAAAAAGATATT GTTCGACGCATTTCTTTTTTGTCTCTCTCTTTACGTTCACTTATAAATGTCTTTGTTGTT TGTGTAAATATATATTGTCTCGGATACAATTGTACATAATAACAAATAATATATCATCAG TAGTATATAAAAAAAAAAAAAAAA



consensusID : consensus_10810#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 377
fasta sequence
                              [CAAAAAAGAAATGCGTCGAACAATATCTTTTTTACGACTTTAACAAAGTAACAATATATGAGTAGTATGGTGTATGTATATATTTAAAAAATGGAAAAAAATGGTTTTCGATTGATAGTGAGATCAATCATTTGATTGGTTGATAGAATATGGAGTCGTAAAGATATTCATTGGAAACGTTTACATGTGAACTCAATCGTTGTATGCAAAGTTGAAGCTGAAATAGAATTGAAAGGTCAAAGAATAACCCAACAACAATAAAGATCATACAGAGGTATATGTCGTACATTTTACTGAATATGAGTTGAATGATATACACACTTATGGTGAACTGTTATTGGAACTGATAACATTAAGTGGTATTCGCTAGGTTTGTC]

[+] EMBL CD161802             [CAAAAAAGAAATGCGTCGAACAATATCTTTTTTACGACTTTAACAAAGTAACAATATATGAGTAGTATGGTGTATGTATATATTTAAAAAATGGAAAAAAATGGTTTTCGATTGATAGTGAGATCAATCATTTGATTGGTTGATAGAATATGGAGTCGTAAAGATATTCATTGGAAACGTTTACATGTGAACTCAATCGTTGTATGCAAAGTTGAAGCTGAAATAGAATTGAAAGGTCAAAGAATAACCCAACAACAATAAAGATCATACAGAGGTATATGTCGTACATTTTACTGAATATGAGTTGAATGATATACACACTTATGGTGAACTGTTATTGGAACTGATAACATTAAGTGGTATTCGCTAGGTTTGTC]
[+] EMBL CD161807             [CAAAAAAGAAACGCGTGGAACAATATCTTTTTTACGACTTTAACAAAGTAACAATATATGAGTAGTATGGTGTATGTATATATTTAAAAAATGGAAAAAAACGGTTNTTGATTGATAGCGAGATCAATCATTTGATTGGTTGATAGAATATGGAGTCGTAAAGATATTCATTGGAAACGTTTACATGTGAACTCAATCGTTGCATGCAAAGTTGAAGCTGAAATAGAATTGAAAGGTCAAAGAATAACCCAACAACAATAAAGATCATACAGAGGTATATGTCGTACATTTTACTGAATATGAGCTGA                                                                     ]


>consensus_10810#3 CAAAAAAGAAATGCGTCGAACAATATCTTTTTTACGACTTTAACAAAGTAACAATATATG AGTAGTATGGTGTATGTATATATTTAAAAAATGGAAAAAAATGGTTTTCGATTGATAGTG AGATCAATCATTTGATTGGTTGATAGAATATGGAGTCGTAAAGATATTCATTGGAAACGT TTACATGTGAACTCAATCGTTGTATGCAAAGTTGAAGCTGAAATAGAATTGAAAGGTCAA AGAATAACCCAACAACAATAAAGATCATACAGAGGTATATGTCGTACATTTTACTGAATA TGAGTTGAATGATATACACACTTATGGTGAACTGTTATTGGAACTGATAACATTAAGTGG TATTCGCTAGGTTTGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10810#1      ------------------------------------------------------------
consensus_10810#2      ------------------------------------------------------------
consensus_10810#0      TCGAGCCAANAATTCGGCACGAGGCGGCATCAAAGCTTATACGTTACAGTAATATGGTAC 60
consensus_10810#3      ------------------------------------------------------------
                                                                                   

consensus_10810#1      ------------------------------------------------------------
consensus_10810#2      ------------------------------------------------------------
consensus_10810#0      ACATGACAGGCTGGCCGAAAGGTTCGGCCGAAAAGTTCCTTCATTCTACACCTGTTGCTA 120
consensus_10810#3      ------------------------------------------------------------
                                                                                   

consensus_10810#1      -----------------------GCTACCCATACATTCCTGCTCATGTAACTAAACCTAA 37
consensus_10810#2      ------------------------------------------------------------
consensus_10810#0      AAACGATAACGTTATATCCTTTGAAAAGTTATAGTTTTGGCACCAAAGAACCCAATTATG 180
consensus_10810#3      ------------------------------------------------------------
                                                                                   

consensus_10810#1      AGAACAAACACGTTTATTTCTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATC 97
consensus_10810#2      ---------------------------------------------------TAC-CCATC 8
consensus_10810#0      AACGAGATCGGAGTGTTCCTGCTCGATTTCAACGGTTACAGGAGGATTTTGAGAAGTATG 240
consensus_10810#3      ----------------------------------------------------CAAAAAAG 8
                                                                                *  

consensus_10810#1      GAAT-TACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATG---CTCGAG--C 151
consensus_10810#2      GGAT-TACAAATTAGTCGCAGCTCCGTTATTCGAACTTTTTGACAATG---CTCGAG--C 62
consensus_10810#0      GTATGCGTCGATCAGTTGAAGGCATCTTACTTGTACATGAGCACAACCTACCTCATGTCC 300
consensus_10810#3      AAATGCGTCGAACAATATCTTTTTTACGACTTTAACAAAGTAACAATA---TATGAGT-A 64
                         **      *  * *            * *   **      ****          *   

consensus_10810#1      TTATGGTCCAATT----ATTTCTTCCTTAC-CTCAAGTATTAAGTCGCTTCAACTTTGC- 205
consensus_10810#2      TTATGGTCCA-TT----ATTTCTTCCTTAC-CTCAAGTATTAAGTCGCTTCAACTTTGC- 115
consensus_10810#0      TCTTACTTCAACTCGGGACGTTTTTCAAACTCCCTGGAGGTGAATTGCATCCAGGTGAAG 360
consensus_10810#3      GTATGGTGTATGT----ATATATTTAAAAA---ATGGAAAAAAATGGTTTTCGATTGATA 117
                          *  *  *  *    *  * **    *       *     * * *  *     *    

consensus_10810#1      -----ATACAACGATTGAG----TTCACATGTAA-ACGTT---TCCAATGAATATCTTTA 252
consensus_10810#2      -----ATACAACGATTGAG----TTCACATGTAA-ACGTT---TCCAATGAATATCTTTA 162
consensus_10810#0      AAGAAATTGAAGGACTAAAGCGATTATTATCTGAGATGTTAGGTCGGACGGATGGCATCC 420
consensus_10810#3      GTGAGATCAATCATTTGA-----TTGGTTGATAGAATATGGAGTCGTAAAGATATTCATT 172
                            **  *     * *     **      *   *  *    **  *   **       

consensus_10810#1      CGACT--CCATATTCTATCAACCAAT-CAAATGATTGATCTCACTATCAATCGAAAACCA 309
consensus_10810#2      CGACT--CCATATTCTATCAACCAAT-CAAATGATTGATCTCACTATCAATCGAAAACCA 219
consensus_10810#0      CAGTTGACTGGATTCCAGAAGACTGTATCGGTAATTGGTGGCGAC-CGAATTTCGAACCA 479
consensus_10810#3      GGA------AACGTTTACATGTGAACTCAATCGTTGTATGCAAAGTTGAAGCTGAAATAG 226
                                    *  *                 *   *         **     **   

consensus_10810#1      TTTTTTT-TCCAT---TTTTTAAATATATACATACACC-ATACTACTCATATATTGTTAC 364
consensus_10810#2      TTTTTTT-TCCAT---TTTTTTAATATATACATACACC-ATACTACTCATATATTGTTAC 274
consensus_10810#0      CCTCGCTACCCATACATTCCTGCTCATGTAACTAAACCTAAAGAACAAACACGTTTATTT 539
consensus_10810#3      AATTG------AAAGGTCAAAGAATAACCCAACAACAATAAAGATCATACAGAGGTATAT 280
                         *        *    *        *       *     * *   *  * *      *  

consensus_10810#1      TTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTAC 424
consensus_10810#2      TTTGTTAAAGTCGTAAAAAAGATATTGTTCGACGCATTTCTTTTTTGTCTCTCTCTTTAC 334
consensus_10810#0      CTAATTCAACTTCCTGAGAAAACATTGTTTGCTGTACCATCGAATTACAAATTAGTCGCA 599
consensus_10810#3      GTCGTACATTTTACTGAATATGAGTTGAATGATATACACACTTATGGTGAACTGTTATTG 340
                        *  *  *  *     *  *    ***   *    *        *          *    

consensus_10810#1      GTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTA 484
consensus_10810#2      GTTCACTTATAAATGTCTTTGTTGTTTGTGTAAATATATATTGTCTCGGATACAATTGTA 394
consensus_10810#0      GCTCCGTTATT--CGAACTTTTTGACAATGCTCGAGCTTATGGTCC---AATTATTTCTT 654
consensus_10810#3      GAACTGATA-----ACATTAAGTGGTATTCGCTAGGTTTGTC------------------ 377
                       *  *   **         *   **    *         * *                   

consensus_10810#1      CATAATAACAAATAATATATCA-TCAGTAGTATATAATTCGTCATATTGATTGTCATTAT 543
consensus_10810#2      CATAATAACAAATAATATATCA-TCAGTAGTATATAAAAAAAAAAAAAAAA--------- 444
consensus_10810#0      CCTTACCTCAAGTATTAAGTCGCTTCACTTTGCATACACGATTGAGTTACATGTAAACGT 714
consensus_10810#3      ------------------------------------------------------------
                                                                                   

consensus_10810#1      TTTTCTAGATAATAAACTATTG-------------------------------- 565
consensus_10810#2      ------------------------------------------------------
consensus_10810#0      TTCCATGAATATCTTTACGACTCCATATTCTATCAACCAATCCTACCTAACGCA 768
consensus_10810#3      ------------------------------------------------------
                                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)